Hymenobacter sp. BT18: HER32_07880
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Entry
HER32_07880 CDS
T06970
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hrs
Hymenobacter sp. BT18
Pathway
hrs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HER32_07880 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrs03021
]
HER32_07880 (rpoC)
03400 DNA repair and recombination proteins [BR:
hrs03400
]
HER32_07880 (rpoC)
Enzymes [BR:
hrs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HER32_07880 (rpoC)
Transcription machinery [BR:
hrs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HER32_07880 (rpoC)
DNA repair and recombination proteins [BR:
hrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HER32_07880 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QIX61106
LinkDB
All DBs
Position
complement(1863786..1868132)
Genome browser
AA seq
1448 aa
AA seq
DB search
MAFAKNKKLVQDFSKVTISLASPESILERSNGEVVKPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFKSLPNKI
GYLLGLPTKKLDQIIYYERYVVVQPGVLGEEGVQQLDFLTEDEYLDIIDKLPRENQMLPN
EDPNKFIARMGADALQLLLERINLDELSYSLRDSAAHETSQQRKAEALKRLRVVEAFRDA
ATRVENKPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRAEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKNMAAELFKPFIIRKLIERGIVKTVKSAKKIVDRKDA
VVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPRLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGPAAILEASMLMLASHNILNPANGAPIAVPSQDMVLGLYYVTKGKRSTEDEKID
GEGMMFYSDEEVVIAINEGILSKHAYIKVRTQVRDEDDNLVTKIIETVAGRVLFNQLVPA
EVGFVDELLTKKKLQQIISMVFKRTGMARTAQFLDDIKTLGFQSAYKGGLSMGLGDINIP
KEKDALIAQAQADVAAVTQNYQMGLITDNERYNQVIDIWTRINNQITETLMGRLEKENQG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKSLQGSVGEIIENPILSNFKEGLDVIE
YFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIVNEVDCGTLRGIETFALKDNEDV
VEPLAERILGRVAVHDIIDPLTDEIILTAGDEITEEVTRRIDATSIESVEIRSVLTCESK
RGICGKCYGRNLSSGRMVQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGTASNIAVEASLK
AKFAGVVEFEDIRTVETANPDGEPVKVVMGRSGEIRIVEKGTGKVFISNHVPYGSFLLVE
EGQEVEKGTELNNWDPYNAVILAEFDGTVQYDAITEGITYREESDEQTGHREKVIIESKA
KDQNPAIIIRPGKKGDMEGHKAYSIPVGSHLNVENGEKIKAGQILAKIPRAVGKTRDITG
GLPRVTELFEARNPSNPAVVAEIDGVVTYGTVKRGNREIFVESKDGVKKKYMVPLSKHIL
VQDNDFIRAGSPLSDGAITPSDILSIQGPGAVQEYLVNEIQEVYRLQGVKINDKHIEVVV
RQMMQKVVILDAGDTTFLEHQVIDKIIFMEENDTIIDMKVVTNAGDSTNLKPGQIVTARR
LRDENSSLRRRDLQLVEVRDAQPAVSRPTLQGITQASLGTQSFISAASFQETTKVLSEAA
IRGKADELLGLKENVIVGHLIPAGTGLREYTRQIVGSKDELEALQAPKADDVVAPAKRPA
RAARRESV
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttgcaaaaaacaagaaactggtacaggacttctcgaaagttaccatttcgctg
gcctcccccgaatccattctggagcggtcgaacggtgaagtagtaaagcccgagacgatc
aactaccggacgtacaagcccgagatgggcggcctgttttgcgagcggattttcggtccc
gtgaaggactgggaatgccactgcggcaaatacaagcggattcgctacaaaggcattatc
tgcgaccgttgcggcgtggaggtgaccgagaagaaagtacgccgggagcggatgggccac
atcgaactggtggtgcccgtagcgcacatctggtacttcaagtccctgcccaataaaatc
ggctacttgctgggcctgcccaccaagaagctcgaccaaatcatttattacgagcggtat
gtagtcgtacagccgggcgtgctgggtgaagaaggcgtgcagcagctcgacttcctcacc
gaagacgaatacctcgacatcatcgacaagctcccccgtgagaatcagatgctgccgaac
gaggaccccaacaagttcattgcccgcatgggtgctgatgccttgcaactcctgttggag
cgcatcaacctggacgagctgtcgtactcgctgcgggactctgccgcccacgaaacttcg
cagcagcgtaaggctgaggctctgaagcggcttcgcgtagtagaagccttccgcgacgcc
gctacccgcgtggaaaacaagcccgagtggatggttatccgcatggtgcccgttattccc
ccggagttgcgtcccctcgttccgctggatggtggccgtttcgccacgtccgacttgaac
gacctgtaccgtcgcgttatcatccgcaacaaccgcctcaagcgcctgatcgaaatcaag
gctcccgaggtgattttgcggaatgagaagcgcatgctgcaggaagccgtggattcgctg
ttcgacaactcgcgtaaggtgaatgccgtgcgcgctgaaggcaaccgcgctctgaagtcg
ctgtccgatatgctgaaaggcaagcagggccgcttccgtcagaacctgctcggtaagcgt
gttgactattcgggtcgttcggtaatcgtcgttggtcctgagctgaagctgcacgagtgc
ggtctgcccaagaacatggcggccgagttgttcaagccgttcatcatccgcaagctcatc
gagcgcggcatcgtgaagacggtgaagtcggccaagaagattgtcgaccgcaaggacgcc
gtagtatgggacatcctggagaacgtgctgaaaggccacccagtgctcctgaaccgggct
ccaaccctgcaccgcttgggtatccaggcgttccagccccgcctcatcgagggtaaggct
atccagttgcacccgctggtttgtacggccttcaacgctgactttgacggtgaccagatg
gctgtgcacgttcccctgggaccggccgctatcctggaagcctctatgctcatgctggct
tcgcacaacatcctgaaccccgccaacggcgcgcccatcgcggtaccgtcgcaggacatg
gtactcgggctgtactacgtgaccaaaggcaagcgcagcaccgaagacgagaaaatcgac
ggggagggcatgatgttctactccgatgaggaagtagttattgccatcaacgaaggcatt
ctgtcgaagcacgcttacattaaggtgcgcacgcaggttcgggacgaagacgacaacctc
gtaacgaagattattgagacggttgccggccgcgtgctgttcaatcagctggtgcccgcc
gaagtaggtttcgtagatgagctgctgaccaagaaaaagctgcagcaaatcatttcgatg
gtgtttaagcggaccggcatggcccgcaccgcgcagttcctcgacgacatcaagacgctg
ggcttccagtcggcttacaaaggtggtctgtcgatgggtctgggtgacatcaacatcccg
aaagagaaagacgcccttattgcgcaggctcaagccgacgtagctgccgtaacgcagaac
taccagatgggtctgattaccgacaacgaacggtacaaccaggttatcgacatctggact
cgcatcaacaaccaaatcactgaaaccctcatgggtcgcctcgaaaaggagaaccagggc
ttcaactcgatttacatgatgatgcactccggcgcccgtggttcgcgcgagcagattcgt
cagctcggcggtatgcggggtctgatggctaagccgcagaagtcgctgcagggttcggta
ggcgagattatcgaaaacccgattctgtcgaacttcaaagaaggcctcgacgtaatcgag
tacttcatctcaacccacggtgctcgtaaaggtctggccgacacggctctaaaaacggct
gacgccggctacctgacccgtcgtctggtagacgtatcgcaggacgtaatcgtaaacgaa
gtggactgcggtaccctgcgtggcatcgaaaccttcgccctgaaggataacgaggacgta
gtagagccgctggccgagcgtatcctgggccgcgtagcggtacacgatatcatcgacccc
ctgaccgacgaaatcatcctcactgcgggtgatgaaatcacggaagaggttacccgccgt
attgatgctactagcatcgaatcggtggaaatccgctcggtactgacttgcgaatccaag
cgtggtatttgcggcaagtgctacggccgtaacctgtcatcgggccgcatggtgcagaaa
ggtgaggctgtcggcgtaattgctgcccagtccatcggtgaacccggcacccagctcacg
ctgcgtactttccacgtaggtggtacggcctctaacattgccgtagaagccagcctgaag
gccaagttcgccggtgtggtagagttcgaagacatccggaccgtagaaactgccaacccc
gacggggagccagtgaaagtggtaatgggtcgctcgggcgaaatccgcatcgtggagaaa
ggcaccggcaaggtgttcatctccaaccacgttccttacggctcgttcctgctggttgaa
gaaggccaggaggtagagaaaggcaccgagctgaacaactgggacccgtacaacgccgtt
atcctggccgagttcgatggtaccgttcagtacgacgccatcaccgaaggcatcacctac
cgcgaggagtcagacgaacagactggtcaccgcgagaaagtgattatcgaatcgaaggct
aaggaccagaacccggccatcatcattcgtcctggcaagaaaggcgacatggaaggtcac
aaggcctactctatcccggttggctcgcacttgaacgtggagaatggggagaaaatcaag
gctggtcagatcctggctaagattccgcgtgccgtgggcaaaacccgcgacatcaccggt
ggtctgccccgcgttacggagctcttcgaagcccgtaacccctcgaacccggccgttgtg
gccgaaatcgacggtgtagtaacctacggtacggtgaagcgtggtaaccgtgaaatcttc
gtggagtcgaaagacggcgtgaagaaaaaatacatggtaccgctgtccaagcacattctg
gtgcaggacaacgacttcatccgcgcgggttcgccgctttccgatggtgccatcaccccg
tccgacatcctgagcattcagggtccgggcgccgtgcaggaatacctcgtgaacgagatt
caggaagtgtaccgcctgcagggggtaaaaatcaacgataagcacatcgaggtggtcgtt
cgccagatgatgcagaaagtggttatcctcgacgccggtgatacgaccttcttggagcac
caggtaatcgacaagattatcttcatggaggaaaacgataccatcatcgacatgaaggtg
gtaaccaacgcgggcgactccacgaacctgaagcccggccagattgtaacggctcgtcgc
ctgcgcgacgagaatagcagcctgcgccgccgcgacctgcaactggtagaagtacgcgac
gctcagccggccgtatctcgtcccacgctgcagggtatcacgcaggcttcgctgggtacg
cagtcgttcatctcggccgcttccttccaggaaacgaccaaggtgctgtcggaagctgcc
atccgtggcaaggccgacgaactgctgggcttgaaggagaacgtaatcgtaggtcacctc
atcccggctggtacgggtctgcgcgagtacacgcgtcagattgtgggctcgaaggacgag
ctggaagcgctgcaagcgcccaaagccgacgacgtggtagctccggctaagcgtcccgcc
cgcgccgcccgccgcgagtcggtgtaa
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integrated database retrieval system
