Hymenobacter sp. BT18: HER32_10280
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Entry
HER32_10280 CDS
T06970
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hrs
Hymenobacter sp. BT18
Pathway
hrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER32_10280 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrs03019
]
HER32_10280 (rnr)
03016 Transfer RNA biogenesis [BR:
hrs03016
]
HER32_10280 (rnr)
Enzymes [BR:
hrs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HER32_10280 (rnr)
Messenger RNA biogenesis [BR:
hrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HER32_10280 (rnr)
Transfer RNA biogenesis [BR:
hrs03016
]
Prokaryotic type
tRNA degradation factors
HER32_10280 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QIX61540
LinkDB
All DBs
Position
complement(2436911..2439418)
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AA seq
835 aa
AA seq
DB search
MKEKDESAAPRASRAKAARGDQATPISKDLVFRVFRDNPGKVLSYRQLSRRLGVATKEQR
EDVFAHLKSLKKSGQLTLLQNDDYRLTDASTAQAATEPASGRKTRKNDREPFAAVNRGGR
PAELVGQDPVVHRRREAGFDFPDADAPTTPRRAGRSEGGDTITGTVALATDKYAFIISEE
SEQDVRVFTDRLKFAMHGDTVRLRLRGSRDGRPVGDVVEVLNRVRPEIVGRLYLKGGIGF
VKPDNRKLYFDVFVPFENLHGANHGEKVLVRITEFPEHDAGRQPVGEVARSFGQAGENEA
EINAIMAEFGLPFEFPAEVEAESESIPLEIPAGEIERRRDFRHITTFTIDPVDAKDFDDA
LSIQKLENGHWEIGVHIADVTHYVRPGMALEKEARYRATSVYLVDRVIPMLPERLSNGLC
SLRPNEDKLTFSAVFELDENGKLYNSWFGKTIIHSDRRFAYEDAQERIEGLEADYTAEIQ
LMNSIAKKLCAQRFKQGAISFETQEVKFKLDADGKPLGVYVKERKDAHKMIEEFMLLANR
KVAEFVFKLKNRKPRYTMVYRVHDAPDEERLQNFALFAQKFGHQLDLSNPKKLSAELNDL
SSEVVGRPEQNVIQTLAIRTMAKATYTTDPRGHFGLAFEHYSHFTSPIRRYPDMMAHRLL
EHYLEGGKNVEVEPIEEECKHSSEREKLAANAERASIKYKQVEFLQDRVGEQFTGVVSGL
TDWGVYVEIEENKCEGMVRIADIPGDFYELDKDNYRLVGQHTKRIIQFGDELQVVVKAAN
LLDRTIDFELVDNRPDSVKRREQEERQSRRGYRPERSSKGGRPGGKSGGGGNRRR
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaagacgaatccgccgccccccgcgcctcccgcgcgaaggcagcccgtggc
gaccaagccactcccatttccaaagacctcgtgtttcgcgtgttccgcgacaacccgggc
aaagttttatcctaccgtcagctttcccgccgcctgggcgtggccaccaaggagcagcgc
gaagacgtgtttgcgcacctcaagagcctgaagaaatccggccagcttaccctgctgcag
aacgacgactaccgcctgaccgatgccagtaccgcgcaagccgctacggagcccgccagc
ggccgcaaaacccgcaaaaatgaccgggagccattcgccgccgtcaaccgcggtggccga
cccgccgagctggtagggcaggacccggtggtacaccgtcgccgcgaagccgggtttgat
tttcccgacgccgatgcgcccaccaccccgcgccgcgctggccgctccgaagggggcgac
accatcaccggcaccgtggccctggctaccgacaagtacgccttcatcatctccgaggaa
agcgagcaggatgtgcgcgtgttcaccgaccggctgaagtttgccatgcacggcgacacc
gtgcgcctgcgcctgcgcggctcccgcgacggccgccccgtgggcgacgtggtggaagtc
ctcaaccgggtgcgccccgagattgtggggcgcctctacctgaaaggtggcattggcttc
gtgaagcccgacaaccgcaagctgtacttcgacgtgttcgtgcccttcgagaacctgcac
ggcgccaaccacggcgagaaggtgctggtgcgcatcaccgagtttccggagcatgatgcc
ggccgccagcccgtgggcgaggtagcacgcagcttcggtcaggccggcgagaacgaagcc
gaaatcaacgccatcatggccgagtttgggctgccgtttgagtttccggccgaggtagaa
gcggagtcggaaagcattccgctggaaataccggccggcgagattgagcgccgccgcgac
ttccgccacatcaccaccttcaccatcgaccccgtcgatgccaaggacttcgacgatgcc
ctgtcgattcagaagctcgaaaacgggcattgggaaattggcgtgcacattgctgacgta
acgcactatgtgcggcccggtatggccctggaaaaggaagcccgctaccgcgctacctcc
gtgtacctggtagaccgcgtgattccgatgctgccggagcgcctttccaacggcctctgc
tccctgcgccccaacgaggacaagcttaccttctcggccgtgttcgagctggacgagaac
ggcaagctctacaactcctggtttggcaaaaccatcatccactccgaccgccgcttcgcc
tacgaagatgcccaggagcgcatcgaagggttggaagctgactacacggccgaaatccag
ctgatgaactccattgccaagaagctctgcgcccagcgcttcaagcagggcgccattagc
ttcgaaacccaggaagtgaagttcaagctcgacgccgacggcaagccgctgggtgtgtac
gtgaaggagcgcaaggacgcgcacaagatgattgaggagttcatgctgctggccaaccgc
aaggtggccgagttcgtgttcaagctcaagaaccgcaagccgcgctacaccatggtctac
cgggtgcacgacgcccccgacgaggagcgcctgcagaactttgccctctttgctcagaag
tttggccaccagctcgacctttccaaccccaaaaagctgagtgccgagctcaacgatttg
agcagtgaagtggtgggccggcccgagcagaacgtcatccagacgctggctatccggacc
atggccaaggccacgtacaccaccgacccgcgcggccactttggtctggcctttgagcac
tactcgcactttacctcgcccatccggcgctaccccgacatgatggcgcaccgcctgctg
gagcactacctggaaggcggcaagaacgtggaagtggagcccattgaggaagagtgcaag
cactcctccgagcgcgagaagctggccgccaatgccgagcgcgccagcatcaagtacaag
caagtagagttcctgcaggaccgcgtgggcgagcagttcaccggcgtggtatcgggcctc
accgactggggcgtgtacgtggaaatcgaggaaaacaagtgcgagggcatggtgcgcata
gccgacatccccggcgacttctacgagcttgacaaggacaactaccgcctcgtaggtcag
cacaccaagcgcatcatccagttcggcgacgagctgcaggtggtggtgaaagccgccaac
ctactcgaccgtaccatcgacttcgagctggtagataaccgccccgattcggtgaagcgc
cgcgagcaggaggaacgccagagccgccgcggctaccgccccgagcgtagcagcaaaggc
ggccggcccggcgggaagtcgggcggtggcggcaaccgccgccggtaa
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