Hymenobacter sp. BT18: HER32_12270
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Entry
HER32_12270 CDS
T06970
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hrs
Hymenobacter sp. BT18
Pathway
hrs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HER32_12270 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrs03400
]
HER32_12270 (mfd)
Enzymes [BR:
hrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HER32_12270 (mfd)
DNA repair and recombination proteins [BR:
hrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HER32_12270 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QIX61916
LinkDB
All DBs
Position
complement(2866744..2870274)
Genome browser
AA seq
1176 aa
AA seq
DB search
MKVSDFLKLYALDPTVLTVGARLNPATRNTLRGAAKAEAGATRLHLRGLIGSQDAVLAAA
LHREFPDQHHLFILHDRDEAAYFLADLQHLVPNEEPLLFPTSYKRPYSFDETENANVLMR
AEVLNKLNSHRGPKTTAEQASEDADDALPEGAEKSQKGKKISIKDTAGALIVTYPEALFE
KVINKKSLVANTFLVKVGDKLDVNFVSEMLAEYDFERSDFVYEAGQFAVRGGIVDIFSYA
NELPYRIELFGDEVETIRTFDPESQLSVEKRQQVSIIPNVQTKLLQETREAFLDFIPPNT
TVWAKDVRQTLDVVDEYFDKAEHGFKELLAASGGTQVVSKPDDLFETGKSLKKLLDGFAV
VEFGKRFHYKTGAEEFQFSAKPQPSFGKDFNRIVKNLHDNQKKGYTNIIAAEQVRQADRL
RTIFDELDNNVQFQHLLLGLREGFIDETLKLVVYTDHQLFERYYRAQETRKFSKKKALTL
KELRTLVPGDYVVHQDYGIARFAGLTQVEINDRLQEAIRLVYRDDDVLTVSIHALHKIAK
YSGAEGTPPSMSKLGSPEWENKKKSVKKKVKDIAAELIRLYAKRKTAPGHAFAQDSFMQA
ELESSFIYEDTPDQAKATEDVKRDMEVPHPMDRLVCGDVGFGKTEVAIRAAFKAVADGKQ
VAMLVPTTILAMQHYKTFRERLGNLPVTVEYVNRFKTTKQIKETLGRVADGKTDILIGTH
RLTNKDVQFKDLGLLVIDEEQKFGVKTKDKLKEIKVNVDTLTLSATPIPRTLHFSLMGAR
DLSVIATPPPNRQPVQTELHVFDELLIRDAIAREIKRGGQVFFVHNRIKDIEEQASMILR
LVPDARVTYVHGQMEGDLLEKRMMKFVDGDYDVLVSTTLIESGLDIANANTIIINRAHMH
GLSDLHQMRGRVGRSNKKAYCYLLTPPVAGLPSDARKRLSTLEEFSDLGAGFNVAMRDLD
IRGAGNLLGGEQSGFINDLGFETYHQILDEAVQELKETEFRDLFLGDPTQRLQEAAGTGR
PKECNIETDLQILIPDHYVTSVSERLQLYSKLDRAKNPEELRKVLTGMIDRFGPLPAEVE
QLADIVRLRWQACQVGFEKLTLKKNLLKGYIPATNNEPYFQGDTFGNILSYVQSHTRTAS
MKERKEQLILSIEDVKNVQAAKRILSELGSEEAVGV
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
ttgaaggtctccgattttctgaagctctacgccctcgacccaaccgtgctgaccgtgggt
gcccgcctgaacccggccacgcgcaacaccctgcgcggagctgccaaagctgaggccggc
gccacccgcctgcacctgcgcggcctcatcggctcccaggatgccgtgctggccgccgcc
ctgcaccgcgagtttcccgatcagcaccacctgttcatcctccacgaccgggacgaggcc
gcttacttcctggccgacctccagcatttggtgcccaacgaggagcccctgctgttccct
acctcctacaagcgcccctactccttcgacgagacggaaaacgccaacgtgctgatgcgg
gccgaggtgctcaacaagctcaatagccaccgcggccccaaaaccaccgccgagcaggcc
tcggaggacgccgacgatgccctgcccgaaggcgcagaaaaaagtcagaagggcaagaaa
atcagcataaaggacacggccggggcacttatcgtcacctaccccgaggccctgttcgag
aaggttatcaacaagaaaagcctagtggccaacacctttctggtgaaggtgggcgacaag
ctcgacgtgaacttcgtgagcgaaatgctggccgagtacgacttcgagcggagcgacttt
gtgtacgaggccggccagtttgccgtgcgcgggggcattgtggacattttctcctacgcc
aacgagctgccctaccgcatcgagctgttcggcgacgaggtggaaaccattcgcaccttc
gacccggaaagccagctgtcggtggaaaagcgccagcaggtgagcatcatccccaacgta
caaaccaagctgctccaggaaacgcgggaggccttcctcgactttattccgcccaacacc
accgtgtgggccaaggacgtgcgccagaccctggacgtggtagacgagtacttcgacaag
gccgagcacggcttcaaggagctgctggcggcttcgggcggcacccaggtggtgagcaag
cccgacgacctgtttgagacgggcaagtcgctgaagaagctgctcgacgggtttgcggtg
gtggagttcggcaagcggtttcactacaagaccggggccgaggagttccagttcagcgcc
aagccccagcccagcttcggcaaggacttcaaccgcatcgtcaagaacctacacgacaac
cagaagaagggctacaccaacattattgccgccgagcaggtgcgccaggccgaccgcctc
cgcaccatcttcgacgagctggacaacaacgtgcagtttcagcacctgctgctgggcctg
cgcgaagggtttatcgacgagacactgaagctcgtcgtgtacaccgaccaccagctgttt
gagcgctactaccgggcccaggaaacccgcaagttctccaagaaaaaggcccttaccctc
aaggagctgcgcaccctcgtgcccggcgactacgtggtgcaccaagactacggcattgcc
cgctttgccggcctcacgcaggtcgaaatcaacgaccggctccaagaagccatccggctg
gtgtaccgcgacgacgacgtgctgaccgtgagcatccacgccctgcacaagattgccaag
tactcgggggccgagggcaccccgccctccatgagcaagctgggctccccggagtgggaa
aacaagaagaagtccgtcaagaaaaaggtgaaagacattgcggccgagctcatccgcctc
tacgccaagcgcaaaaccgcgcccggccacgccttcgcccaggactcctttatgcaggcc
gagctggaatcctccttcatctacgaggacacccccgaccaggccaaggccaccgaggac
gtgaagcgcgacatggaagtgccccaccccatggaccgcctcgtgtgcggcgacgtgggc
tttggcaagaccgaggtagccatccgggccgccttcaaggccgtggccgacggcaagcag
gtagccatgctggtgcccaccaccatcctggccatgcagcactacaaaaccttccgcgag
cggctcggcaacctgcccgtcacggtggagtacgtcaaccgcttcaagaccaccaagcaa
atcaaggaaaccctgggccgggtggccgacggcaaaaccgacatcctcattggcacccac
cgcctcaccaacaaggatgtgcagttcaaggacctgggccttctggtgattgacgaggag
cagaagttcggggtgaaaaccaaagacaagctcaaggaaataaaggtgaacgtggacacg
ctcaccctctcggccacgcccattccgcgtaccctgcacttctccctcatgggcgcccgc
gacctgagcgtgattgccacgcccccgcccaaccgccagcccgtgcaaaccgagctgcac
gtgttcgacgagctgctgatccgcgacgccattgcccgcgaaatcaagcgcggcgggcag
gtattcttcgtgcacaaccgcatcaaagacattgaggagcaggccagtatgattctgcgc
ctcgtgcccgatgcccgcgtgacctacgtgcacgggcagatggagggcgacctgctggaa
aagcgcatgatgaagttcgtggatggcgactacgacgtgctggtgagcaccaccctcatc
gagtcgggccttgatattgccaacgccaacaccatcatcatcaaccgtgcccacatgcac
ggcctctccgacctgcaccagatgcggggccgcgtgggccgctccaacaaaaaggcttac
tgctacctgctcacgcccccggtggccggtctgccctccgacgcccgtaagcgcctgagc
accctcgaagaattctccgacctgggcgcgggcttcaacgtggccatgcgcgacctcgac
atccggggcgcgggcaacctgctgggcggcgagcagtcgggcttcatcaacgacctgggc
ttcgaaacctaccaccagatcctcgacgaagccgtgcaggagctcaaggaaaccgagttc
cgcgacctgtttctcggcgaccccacccagcgcctccaggaagccgccggcaccggccgc
cccaaggagtgcaacatcgaaaccgacctgcagatcctcattcccgaccattacgtcacc
agcgtatcggagcgcctgcagctgtacagcaagctcgatcgggccaaaaaccccgaggag
ctgcgcaaggtgctcaccggcatgatagaccgcttcggccccttgcccgccgaggtagag
cagctcgccgacatcgtgcgcctgcgctggcaggcctgccaggtgggcttcgagaagctc
accctcaagaagaacctgctcaaaggctacatcccggccaccaacaacgagccctacttc
cagggcgacaccttcggcaacatcctctcctacgtgcaaagccacacccgcacggcctcc
atgaaggagcgcaaggaacagctcatcctcagcatcgaagatgtgaagaacgtgcaagca
gccaagcgtatcctcagtgagttagggagtgaggaagcggtaggggtgtaa
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