Hymenobacter sp. BT18: HER32_17585
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Entry
HER32_17585 CDS
T06970
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hrs
Hymenobacter sp. BT18
Pathway
hrs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HER32_17585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrs03019
]
HER32_17585
03400 DNA repair and recombination proteins [BR:
hrs03400
]
HER32_17585
Enzymes [BR:
hrs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HER32_17585
Messenger RNA biogenesis [BR:
hrs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HER32_17585
DNA repair and recombination proteins [BR:
hrs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HER32_17585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Cas3-like_C_2
Ligase_CoA_2
DUF3052
Motif
Other DBs
NCBI-ProteinID:
QIX62887
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All DBs
Position
4106493..4108421
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AA seq
642 aa
AA seq
DB search
MSSLPATDDIEHVLRQTWGHTAFRPLQEDIIRAVLAGQDVLALLPTGGGKSICFQVPALA
RPGLCLVVSPLIALMKDQVDNLRKRGVKAEAVYAGMSHQEIDQTLDNCVYGPVKFLYVSP
ERLLTDMFRARVAKMKVSLLAVDEAHCLSQWGYDFRPPYLRIAELRELLPGVPCIALTAT
ATAQVRQDIVEKLRFGATHRVFQQSFARPNLSYSVLSTEDKLKRLLEVVRGVGPDKTSIV
YARTRRQTEDAAAYLQQHQVQAAAYHAGLPAEQRTRIQQDWMQNKIRCIVATNAFGMGID
KPDVRLVVHLDAPDNLEAYYQEAGRAGRDEKYAFAVLLQGPNDADELCRRTRQAFPELAV
VRRVYQALANFSRTAVGGGELVAFDFDLQQFAETYRIKALDAHNSLRLLEREGFVQVNEA
VNNPARVHIPIDHTDLYRFQVANAQHDQLIKSLLRFHGGELFAGFQRISENSLAQHLRLS
VVELRKMLLFLHRSGVIQFQPRHESPQALFTTPRFDADKLPLEEKRLHQARELALHKTEA
VVRYGAGGRCRQQLLLEYFGELSAPACGVCDFCLAKKKAAQAPTPVPALREQVLALLNAV
PQTPREILTQFLPGQATAVTELLRELVDLGELRYAPDGRLLV
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccctgccggccaccgacgatatcgagcacgtactgcgccagacgtgggggcac
acggctttccggcccttgcaggaggatatcatccgggcggtgctggcggggcaggatgtg
ctggctttgctgcccaccggtgggggcaagagcatctgctttcaggtgccggccctggcc
cgccccgggctgtgcctggtcgtgtcgccgctcattgccctgatgaaggaccaagtagac
aacctgcgcaagcgcggcgtgaaggccgaggccgtgtacgccggcatgagccaccaggaa
atcgaccagaccttggacaactgcgtgtatggcccggtgaagttcctgtacgtgtcgccg
gaacgcctcctgacggatatgtttcgggctcgggtggccaagatgaaagtcagcctgcta
gctgtggatgaggcgcactgcctttcgcagtggggctacgacttccgtcccccgtacctg
cgcattgccgagctgcgtgagctgctgcccggcgtgccgtgcatagccctcacggctacc
gctaccgcgcaggtgcgccaggatattgtggagaagctgcggtttggcgctacgcaccga
gtattccagcaaagctttgcccgacccaacctttcgtattccgtcctgagcaccgaagac
aagctcaagcgtctgctggaagtagtgcgcggggtggggcccgacaaaaccagcatcgta
tatgcccgcacccgccgccagaccgaagacgccgccgcctacctgcagcagcaccaggtg
caggccgcggcttaccacgccggcctgcccgccgagcagcgcacccgcattcagcaagac
tggatgcaaaacaaaatccgctgcatcgtagccaccaacgcctttggcatgggcatcgac
aagccggacgtgcggctggtagtgcacctggatgcccccgacaacctggaagcctattac
caggaagccggccgcgccggccgcgacgagaagtacgcctttgccgtgctgctgcaaggg
cccaacgatgccgatgagctttgccgccgcacccggcaggcctttccggagctggcggta
gtgcgtcgggtataccaagccctagccaacttttcccgcacggccgtggggggcggggag
ctggtggccttcgacttcgacctgcagcagtttgccgaaacctaccgcatcaaagccctg
gatgcccataacagcctgcgcctgctggagcgggaaggatttgtgcaggtgaatgaggcc
gtcaacaacccggcccgcgtgcacatccccatcgaccacaccgacctgtaccgatttcag
gtcgccaacgcccagcacgaccagctcatcaaaagtctgctgcggtttcacggcggggag
ctgttcgcgggcttccagcggatttcggaaaacagcctggcccagcacctgcgcctgagc
gtagtggagctgcgcaagatgctgctgtttctgcaccgctcgggcgttattcagtttcag
ccccgtcacgagtcgccgcaggccctgttcacgaccccccgcttcgatgccgacaagcta
cccctggaggagaagcgcctgcaccaggcccgggagctggccctgcacaaaaccgaagcg
gtggtacgctatggcgccggggggcgctgccgccagcagctgctgctagagtacttcggc
gagctaagtgccccggcttgcggagtctgcgacttttgtttagccaaaaagaaggctgcg
caagcgcctacgcccgtgccggccctgcgcgagcaggtgctggccttgctgaatgcggtg
ccccaaaccccgcgcgaaatacttacgcagtttctgcccggccaggctacagccgttacc
gaactgctgcgggaactagtagacctgggcgagctgcgctacgcccccgacgggcggctg
ctagtctaa
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