KEGG   Hirundo rustica (Barn swallow): 120747572
Entry
120747572         CDS       T09369                                 
Symbol
COPA
Name
(RefSeq) LOW QUALITY PROTEIN: coatomer subunit alpha
  KO
K05236  coatomer subunit alpha
Organism
hrt  Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:hrt00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:hrt04131]
    120747572 (COPA)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hrt04147]
    120747572 (COPA)
Membrane trafficking [BR:hrt04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    120747572 (COPA)
Exosome [BR:hrt04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120747572 (COPA)
  Exosomal proteins of bladder cancer cells
   120747572 (COPA)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz TPR_COPA_B Beta-prop_EML_2 WDR55 Beta-prop_WDR36-Utp21_1st WD40_Gbeta Beta-prop_TEP1_2nd EIF3I Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_WDR41 WD40_RFWD3 WD40_MABP1-WDR62_2nd Beta-prop_Aladin ANAPC4_WD40 Beta-prop_RIG_2nd Beta-prop_SCAP
Other DBs
NCBI-GeneID: 120747572
NCBI-ProteinID: XP_039909514
LinkDB
Position
29:17128..44382
AA seq 1225 aa
MLTKFETKSARVKGLSFHPKRPWILTSLHHNGVXQLWDYRMCTLIDKFDEHDGPVRGIDF
HKQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHVYPWILSASDDQTIRV
WNWQSRTCVCVLTGHNHYVMCAQFHPAEDLVVSASXGPSVRVWDISGLRKKNLSPGAVES
DVRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWMMNESKA
WEVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAA
HPNLNLFAAGHDGGMLVFKLERERPALAVHGNSLFYVKDRFLRQLDFGSSRDVAVMQLRS
GSKFPVFSMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAV
WVARNRFAVLDRMHSILIKNLKNEITKKIPVPNCDEIFYAGTGNLLLRDSDSITLFDVQQ
KRTLASVKISKVKYVIWSGDMSHVALLAKHAILICNRKLESLCQIHENIRVKSGAWDESG
VFIYTTSNHIKYAVTSGDHGIIRTLDLPIYVTRVKGNSVYCLDRECRPRVLGIDPTEFRF
KLALIHRKYDEVLHMVRNAKLVGQSIIAYLQRKGYPEVALHFVKDEKTRFSLALECGNIE
IALEAAKALDDKGCWEKLGEAALLQGNHQVVEMCYQRTKNFDRLSFLYLITGNLEKLRKM
MKIAEIRKDMSGHYQNALYLGDVAERVRILRNCGQKSLAFLTAATHGLDEEAESLRESFD
PEKETIPAVDPEARLLQPPAPVLPXDTNWPLLTVSKGFFEGSIAGKGKGGALAADIDMDA
VGTEGWGEDAELQLDEDGFVDAGEGFGEEGAGKGPEEGGGWEVEEDLDLPPDLDVPAGPA
GAAEDGFFVPPTKGTSPAQVWCNNSQLPVDHILAGSFETAMRLLHDQVGVTNFGPYKQLF
LQTFSRGRTTFQALPSLPALYGFPHRNWKEAGPRSALPAVGLRLTELIQRLQLCYQLTTA
GKFEEAVEKFRLILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMEIERKKLPKETLE
QQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLELGPKPEVAQ
QTRKILAACEKNPSDSHQLNYDQHNPFDICAASYRPIYRGKALERCPLSGACYGPEFRGQ
ICRVTTVTEIGKDVLGLRISPLQFR
NT seq 3678 nt   +upstreamnt  +downstreamnt
atgctgaccaaattcgagaccaaatccgcgcgggtgaaagggctgtcgttccacccgaag
cggccctggatcctcaccagcctccaccacaacggcgtcnatcagctctgggactatcgc
atgtgcaccctcatcgacaagttcgacgagcacgacgggccggtgcgagggatcgacttc
cacaagcagcagccgctcttcgtgtccggaggcgatgattacaaaatcaaggtgtggaat
tacaaactgcggcgctgcctcttcacgctgctgggacacctggattacatccggacaacc
ttcttccaccacgtatatccctggatcctgagcgcttccgatgaccaaaccatccgcgtg
tggaactggcaatcgcgcacctgcgtctgcgtgctgacgggacacaaccactacgtgatg
tgcgcccagttccacccggccgaggacctggtggtgtcggccagcnntggaccgagcgtc
agggtgtgggacatctccgggctccggaagaagaacctctccccgggcgccgtggagtcg
gacgtgcgcggcatcacgggcgtggatctgttcggcaccaccgacgccgtggtcaaacac
gtgctggagggccatgaccgcggggtgaactgggccgccttccacccctccatgccgctg
atcgtgtccggggccgacgaccgccaggtgaagatctggatgatgaacgaatccaaggcg
tgggaggtggacacgtgccggggtcactacaacaacgtttcctgcgccgttttccacccg
cgccaggagctgatcctcagcaactccgaggacaagagcatccgcgtctgggacatgtcc
aagcggaccggagtccagacgttccggcgcgaccacgaccggttctgggtgctggcggcg
catcccaacctcaacctcttcgctgccgggcacgacggcgggatgctggtgttcaagctg
gagcgggagcggccggcgctggccgtgcacgggaattccctcttctacgtcaaggatcga
ttcctgcggcagctcgacttcggcagctcccgcgacgtggccgtgatgcagctccgcagc
ggttccaagttcccggtgttcagcatgtcctacaaccccgcggagaacgccgtgctgctg
tgcacccgagccagcaacctggagaacagcacctacgacctctacaccattcccaaggac
gcggattcccagaatcccgacgctccggaggggaagcgctcctcggggctcacggccgtg
tgggtggcgcggaaccgattcgccgtcctggacaggatgcactcgatcctgatcaagaac
ctgaagaacgaaatcaccaagaaaattccggttcccaactgcgacgagattttctacgcc
ggcaccgggaatctcctgctccgggactccgactccatcacgctcttcgacgtccagcag
aagaggaccttggcctcggtgaagatctccaaggtgaagtacgtgatctggtcgggcgac
atgtcgcacgtggcgctgctggccaagcacgccatcctgatctgtaaccggaagctggag
tcgctgtgccagatccatgagaacatccgggtgaagagcggcgcctgggacgagagcggc
gtcttcatctacaccaccagcaaccacatcaaatacgccgtcacctcgggggatcacggc
atcatccgcacgctggatctgcccatctacgtgacgcgcgtgaaggggaacagcgtctac
tgcctggatcgggaatgccggccccgcgtgctcggcatcgaccccaccgagttccgcttc
aagctggccctcatccacaggaaatacgacgaggtgctgcacatggtgcggaacgccaag
ctggtggggcagtccatcatcgcctacctgcagaggaaggggtaccccgaggtggctctg
cacttcgtcaaggacgagaaaacgcgcttcagcctggcgctggagtgcggcaacatcgag
atcgccctggaggcggccaaggccctggatgacaagggctgctgggagaagctgggcgag
gcggcgctgctgcaggggaaccaccaggtggtggagatgtgctaccagcgcaccaagaac
ttcgaccgcctctccttcctctacctcatcaccgggaacctggagaagctccggaagatg
atgaagatcgccgagatccgcaaggacatgagcgggcactaccagaacgcgctctacctg
ggggacgtggccgagagggttcggatcctgcgcaactgcggccagaagtccctggcgttc
ctgacggccgccacgcacgggctggacgaggaggccgagagcctgcgggaatccttcgat
cccgagaaggagacgatcccggccgtggatcccgaggcgcggctgctgcagccgccggcg
ccggtgctgcccntggacaccaactggccgctgctgaccgtgtccaaaggcttcttcgag
ggctccatcgccgggaaagggaaaggaggagccctggccgccgacatcgacatggacgcc
gtgggcaccgagggctggggcgaggacgccgagctgcagctggacgaagacggattcgtg
gacgccggggaaggattcggggaggaaggagcgggcaaagggcccgaggaaggcggagga
tgggaggtggaagaggatttggatcttccccccgatctggatgttcccgccggccccgcg
ggagcggctgaggatggattcttcgtgccccccaccaaaggcaccagcccagcccaggtg
tggtgcaacaactcccagctccccgtggatcacatcctggccggatccttcgagacagcc
atgaggctgctccatgaccaggtgggggtgaccaacttcgggccctacaagcagctcttc
ctgcagaccttttcccgaggccgcacgacattccaggcgcttcccagcctcccggccttg
tacggattcccgcaccgcaactggaaggaggccgggcccaggagcgcgctgccggccgtg
gggctgcggctgacggagctgatccagcggctgcagctctgctaccagctgaccaccgcc
ggaaagttcgaggaggccgtggagaaattccggctgatcctgctcagcgtgcccctgctg
gtggtggacaacaagcaggagatcgccgaggcgcagcagctgatcaccatttgccgggaa
tacatcgtgggattgtccatggagatcgagaggaagaagctgcccaaggagactctggag
cagcagaagaggatctgtgagatggccgcctacttcacgcactccaacctgcagcccgtg
cacatgatcctggtgctccgcaccgccctcaacctcttcttcaagctcaagaacttcaaa
accgccgccaccttcgcccggcgcctgctcgagctcggccccaagcccgaggtggcccag
cagacgcggaagatcctggcggcgtgcgagaagaaccccagcgacagccaccagctcaac
tacgaccagcacaaccccttcgacatctgcgccgcctcctaccgccccatctaccgcggc
aaggcgctggagcgctgccccctcagcggcgcctgctacgggcccgagttccgcgggcag
atctgccgcgtcaccacggtgacggagatcgggaaggacgtgctggggctgcgcatcagc
cccctccagttccgctag

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