Hirundo rustica (Barn swallow): 120747982
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Entry
120747982 CDS
T09369
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03020
RNA polymerase
hrt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120747982
09124 Replication and repair
03420 Nucleotide excision repair
120747982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrt03021
]
120747982
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120747982
Enzymes [BR:
hrt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120747982
Transcription machinery [BR:
hrt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120747982
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120747982
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120747982
NCBI-ProteinID:
XP_039909982
LinkDB
All DBs
Position
Unknown
AA seq
1255 aa
AA seq
DB search
VIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAK
GSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTE
FFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDG
LAGESVEFQNLATLKPSNKAFEKKFKFDYTNERALRRTLQEELVKDILSNAHIQNELERE
FERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINSRLPSDLHPVKVVEGVKE
LSRKLVIVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESK
FNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPK
TPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNV
YYEMPDFDVSRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL
VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD
NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR
KALERELYHVISFDGSYVNYRHLALLCDTMTSRGHLMAITRHGVNRQDTGPLMKCSFEET
VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKHGMEIPSALPGLGV
GGSTGMFFGSAPSPMGGMSPAMTPWNQGATPAYGAWSPSVGSGMTPGGAGFSPSAASDAS
GFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSY
SPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTP
TSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT
YSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDDDN
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgagaaggcccacaacaacgagctggagcccaccccgggcaacaccctgcggcag
accttcgagaaccaggtgaaccgcatcctcaacgacgcccgcgacaagaccggctcctcg
gcgcagaagtccctgtccgagtacaacaacttcaagtccatggtggtctcgggggccaag
ggctccaagatcaacatctcccaggtgatcgccgtggtgggccagcagaacgtggagggc
aagcgcatccccttcggcttcaagcaccgcacgctgccgcacttcatcaaggacgactac
ggccccgagagccgcggcttcgtggagaactcgtacctggcggggctgacgcccaccgag
ttcttcttccacgccatgggcgggcgcgagggcctcatcgacaccgccgtcaagacggcc
gagaccgggtacatccagcggcgcctgatcaagtccatggagtcggtgatggtcaagtac
gacgccacggtgaggaactccatcaaccaggtggtgcagctgcgctacggcgaggacggg
ctggccggggagagcgtggagttccagaacctggccaccctcaaaccctccaacaaagcc
ttcgagaagaagttcaagttcgactacaccaacgagcgggcgctgcgccggacgctgcag
gaggagctggtcaaggacatcctgtccaacgcgcacatccagaacgagctggagcgcgag
ttcgagcgcatgcgcgaggacagggaggtgctcagggtcatcttccccacgggggacagc
aaggtggtgctcccctgtaacctgctccgcatgatctggaacgcgcagaagattttccac
atcaactcgcgcctgccctcggacctgcaccccgtcaaggtggtggagggggtgaaggag
ctgagccggaagctggtgatcgtgaacggggaggatcccctgagccggcaggcgcaggag
aacgcgacgctgctcttcaacatccacctgcgctccacgctctgcagccgccgcatggtg
gaggagttccgcctcagcggggaggccttcgactggctgctgggggagatcgagtccaag
ttcaaccaggccatcgcgcaccccggcgagatggtgggcgctctggccgcgcagtctctg
ggcgagccggccacgcagatgaccctcaacaccttccactacgccggcgtgtcggccaag
aacgtcacgctgggcgtgccgcgcctcaaggagctcatcaacatctccaagaagcccaag
acgccgtcgctcaccgtgttcctgctgggacagagcgcccgcgacgccgagcgcgccaag
gacatcctgtgccgcctggagcacaccacgctgcgcaaggtgacggccaacaccgccatc
tactacgacccgaacccccagagcacggtggtggccgaggaccaggagtgggtcaacgtc
tactacgagatgcccgacttcgacgtcagccgcatctcgccctggctgctgcgcgtggag
ctggaccgcaagcacatgacggaccgcaagctcaccatggagcagatcgccgagaagatc
aacgccggcttcggcgacgacctcaactgcatcttcaacgacgacaacgccgagaagctg
gtgctgcgcatccgcatcatgaacagcgacgagaacaagatgcaggaggaggaggaggtg
gtggacaagatggacgacgacgtcttcctgcgctgcatcgagtccaacatgctgacggac
atgacgctgcagggcatcgagcagatcagcaaggtgtacatgcacctgccgcagacggac
aacaagaagaagatcatcatcacggaggacggggagttcaaggcgctccaggagtggatc
ctggagacggacggcgtcagcctcatgagggtgctgagcgagaaggacgtggacccggtg
cgcaccacgtccaacgacatcgtggagatcttcaccgttctggggatcgaggcggtgcgc
aaggcgctggagcgggagctctaccacgtcatctccttcgacggctcctacgtcaactac
cggcacctggcgctgctgtgcgacaccatgacctccaggggacacctgatggccatcacc
cggcacggcgtcaaccgccaggacaccgggcccctcatgaagtgctccttcgaggagacg
gtcgatgtcctgatggaggcagctgcccacggcgagagcgaccccatgaagggcgtctcg
gagaacatcatgctgggccagctggcgccggccggcaccggctgcttcgatctgctgctg
gacgccgagaagtgcaagcacggcatggagatccccagcgccctgcccggcctcggcgtc
ggcggctccaccgggatgttcttcggctcggcccccagccccatgggggggatgtccccg
gccatgaccccctggaaccagggggccaccccggcctacggcgcctggtcccccagcgtg
ggcagcggcatgaccccgggcggcgccggattctcgcccagcgccgcctcggacgcctcc
gggttcagccccggctactccccggcctggtcacccacgcccggctcgccggggtcaccc
ggcccctccagcccctacatcccctccccgggtggggccatgtcccccagctacagcccg
acgtcccctgcctacgagccgcggtcgccggggggctacaccccacagagccccagttac
agccccacctcgcccagttacagccccacgtcgcccagttacagccccacgtcgcccaac
tacagccccacgtcgcccagttacagccccacctctcccagttacagccccacctcgccc
agttacagccccacgtcgcccagttacagcccgacctcgccgagctacagccccacgtct
cccagttacagccccacgtctcccagttacagccccacgtcgcccagttacagccccacg
tctcccagttacagcccgacttcgcccagttacagccccacctcgccgagctacagcccc
acgtctcccagttacagccccacttctcccagttacagccccacctctcccagttacagc
cccacctcgcccagttacagccccacctctcccaactacagccccacctcgcccaactac
accccgacgtctcccagttacagccccacctctcccagttacagccccaccagccccaac
tacaccccgacctcgcccaactacagccccacgtcgcccagttacagccccacgtcgccc
agttacagccccacgtcgcccagttactccccgtccagcccccgctacaccccgcagtcg
cccacctacacccccagcagccccagctacagccccagcagccccagctacagccccacg
tcccccaagtacaccccgaccagccccagctacagccccagctcccccgagtacacgccc
acctcgcccaagtacagccccacgtcgcccaagtacagccccacgtcgcccaagtacagc
cccacgtcgcccacctacagccccaccacgcccaagtacagccccacgtcgcccacctac
agccccacgtcgcccgtctacacgccgacgtcgcccaagtacagccccacgtcgcccacc
tacagccccacgtcgcccaagtacagccccacgtcgcccacgtacagccccacgtcgccc
aagggctccacgtacagccccacgtcgcccggctacagccccacgtcgcccacctacagc
ctcaccagcccggccatcagccccgacgacagcgacgacgacaactga
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integrated database retrieval system
