Hirundo rustica (Barn swallow): 120748499
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Entry
120748499 CDS
T09369
Symbol
PCDH9
Name
(RefSeq) protocadherin-9 isoform X1
KO
K16498
protocadherin delta 1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120748499 (PCDH9)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hrt01009
]
120748499 (PCDH9)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hrt04515
]
120748499 (PCDH9)
Protein phosphatases and associated proteins [BR:
hrt01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120748499 (PCDH9)
Cell adhesion molecules [BR:
hrt04515
]
Cadherins
Protocadherins
120748499 (PCDH9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
Big_9
MAP17
V_ATPase_I
RCR
EphA2_TM
DUF6249
7tm_3
DUF6377
Motif
Other DBs
NCBI-GeneID:
120748499
NCBI-ProteinID:
XP_039910821
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Position
2:complement(63706113..64395355)
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AA seq
1225 aa
AA seq
DB search
MDPRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSNTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKESQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RFFALNNTTGLITVQKSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPINTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFSQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKAVDGGQPPRSSTAK
VTINVMDVNDNSPVVIYPPSNTSFKLVPLSAIPGSVVAEVFAVDIDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPTPNDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGTAPPSTFKPNSPDLAKHYKSASPQSAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQALNFGDMP
KYLWEIWVPDKPWVSQRRVTFHLPDGSQESCSDSGLGDHEPVGGGTLISHPLPLVQPQDE
FYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSDNCWMPPSLSPYQ
QPKSPLSTFAPQKEWVKKDKLVNGHTLTRTWKEDSNRNQFSDRKQYGSSEGHFNTGNHVT
DIPLANLKSYKQAPGSVESPKEHQL
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atggacccgagggatttttacctgttggccgctttgattgcctgtttaaggctggattct
gctatagctcaagaacttatttacactattagagaggagctgcctgaaaatgtgcccata
gggaacataccaaaggacctgaacatttctcatatcaatgctgccacagggaccagtgcc
agccttgtctacagactggtgtctaaagcaggggatgcgcctctggtcaaagtgtccagt
aacacgggggaaatctttacaacatctaacagaatagacagagaaaaactgtgtgctgga
gcttcctatgcagaagaaaatgagtgtttctttgaacttgaagtggtgattctccccaat
gacttttttaggctgatcaaaataaaaatcattgtaaaggatactaatgacaatgcacct
atgtttccatcccctgtcatcaatatctccatcccagaaaacactctgatcaacagtcgc
tttccaatcccatcagcaacggatcctgacacaggtttcaatggtgtgcagcactatgaa
ttgttaaatggacagagtgtctttggactggatattgtagaaactccagaaggggagaaa
tggcctcagctgattgtgcagcagaacttggacagagagcaaaaagacacctacgtgatg
aaaatcaaagtggaggatggaggtaccccccagaaatccagcacagctatcctgcaagtc
acagtaagtgatgtcaatgataacaggccagtttttaaagagagtcaagtagaggtccat
ataccagagaatgcccctgtaggcacctctgtaatccagcttcatgctacagatgctgat
ataggaagcaatgcagaaatcagatatatttttggtgcccaagtcgcccctgcaaccaaa
agattttttgctttaaacaacaccacagggctgattacagttcaaaagtccttagatcga
gaagagactgctattcacaaagtgacagtgctggctagcgatggtagctctacaccagcc
cgggcaactgtcaccatcaatgtcactgatgtaaacgataaccctcctaatatagacctc
aggtacataataagtcccatcaatggcacagtgtacttatctgagaaagatcccatcaat
acaaagattgccctaattacggtttcagataaggacactgatgtgaatggcaaagtgatc
tgtttcattgagagagaagtccccttccacttgaaagcagtttatgacaaccagtatttg
ttagagacctcttccttgttggactacgagggcaccaaagaattcagctttaaaattgtg
gcttctgattctggcaagcccagtttgaaccagactgccctggtaagagttaagctggag
gatgaaaatgacaaccctccgattttcagccagcctgtaattgagctgtcagtttctgaa
aacaaccggcgtggtctatacttaacaactattagtgccacagatgaagacagtgggaaa
aatgcagatattgtttatcagcttggtcctaatgcctccttttttgatctggatcgaaag
acaggagttttgacagcctccagagtttttgacagagaagagcaggaacgtttcattttc
actgttacagcccgagacaatggcacccctcctttgcagagtcaagcggctgtaattgtt
actgtgttggacgaaaatgacaacagtcccaaatttactcataatcatttccagtttttc
gtatcagagaacttacctaagtatagcacggtgggtgtgatcacagtgactgatgcagat
gctggggaaaataaagcagtgaccctttccatcctgaatgacaatgaaaactttgtgctg
gatccgtactctggagttataaagtccaacgtttcttttgatcgagagcagcagagctct
tacacttttgatgttaaggcagtggatggagggcaacctcctcgctcttctacagcgaaa
gtaacaataaacgtgatggatgttaatgataacagtcctgttgtcatctacccaccttct
aatacttcttttaagctagtgccactctcagcaattccaggatcggtggtagccgaagtc
tttgctgtggatatagacactggcatgaacgctgagctgaagtacacgattgtaagcggc
aataacaagggtttgtttcggattgatccagtgacaggtaatatcactctagaagaaaaa
ccaacgcctaatgatgtggggttgcatcgcttagttgtcaacataagtgatttgggttat
cccaaatccctgcatactcttgtgcttgtatttttatatgtaaatgatactgctggaaat
gcctcttatatttatgacttgatacgcaggactatggaaacgcctttggatcggaacata
ggggacagtagccaaccctatcaaaatgaggactatctcacaatcatgatcgctattgtg
gcgggtgccatggttgtcatagtggtgatatttgtcacagttcttgttcgctgtcgacat
gcatccagattcaaagctgcccagaggagcaagcaaggtgctgagtggatgtctcccaat
caggaaaacaagcaaaacaagaagaagaaaaggaagaaaaggaaatctccaaagagctcc
cttttgaactttgtgaccattgaggagtccaaacctgatgatgcagttcatgaacctatc
aacgggacaataagccttccagcagagctggaggagcaaagtataggaagatttgattgg
ggcacagcaccaccatcaacctttaagcctaacagtcctgatcttgccaagcattacaaa
tctgcctctcctcagtctgcttttcatctcaaacctgacactccagtttcagtgaaaaag
caccatgtgattcaggaactcccgttggacaacacctttgttggtggttgtgacaccctt
tccaaacgctcttccactagttcagatcacttcagtgcctcagagtgcagttcccaagga
ggcttcaagacaaagggccccttacacaccagacaggcactgaattttggagatatgccg
aagtacttgtgggagatttgggtacctgacaaaccatgggtgtcccagcgccgtgttaca
tttcacctccctgatggctcccaggaaagctgcagtgacagtggtctgggagaccacgag
ccagtgggtggtggaaccctgatctcacaccctctccctctggttcagccgcaggacgaa
ttctacgaccaggcttcaccagacaagaggactgaagctgatggcaattctgaccccaac
tcggatgggcctcttggtccacgaggattagctgaagctacggagatgtgtactcaagaa
tgcctggttttgggtcactcagacaactgttggatgcctcctagcttgagcccataccaa
cagccaaagtctcctctctccacctttgcacctcagaaagaatgggttaagaaggacaaa
ctagttaatggacacacattgaccaggacctggaaagaagatagcaacagaaaccagttc
agtgatcgaaagcagtatggttccagtgagggccatttcaacactggcaaccacgtgact
gacattcctctggccaacttgaagtcttataaacaggccccaggatctgtggagagtcca
aaggagcaccagctataa
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integrated database retrieval system
