Hirundo rustica (Barn swallow): 120749045
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Entry
120749045 CDS
T09369
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03013
Nucleocytoplasmic transport
hrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120749045 (UPF3A)
03015 mRNA surveillance pathway
120749045 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120749045 (UPF3A)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120749045 (UPF3A)
mRNA cycle factors
P-body specific factors
120749045 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
120749045
NCBI-ProteinID:
XP_039912068
LinkDB
All DBs
Position
2:complement(92046368..92071614)
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AA seq
362 aa
AA seq
DB search
MIILSFALLIPGLEYPAVVEFAPFQKISKKKLKKKDAKAGSIEDDPEYRKFLENYCADEE
KICANPEILLGEIEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKREERRRRELEKKRL
REEEKRKRREEERRKRKEVEKQKKISEKEIRIKLLKKPEKGDELASEKHKEKGEEADVEE
NKWDKSPGSGSIKSKSLESSPKGLKEKSQNDSDKEQRDLERRFREKEPERQRYRLDDGRK
HRTHYEFDKFMRRNEEELKWGKGYNQDRGKKGNYSYSFTVEAVDKLGKEDKCDDMASKKE
RIRNKDRPAMQLYQPGARIRTHMGPTSKTYDCTGKSFEDALDKKYEADNSAGASSEKTEE
AE
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atgattattttgagttttgcactgctgatcccaggtttggaatatcctgcagtggttgag
tttgctccattccagaagatttcaaaaaagaagctaaagaagaaagatgccaaagctggg
agcatcgaagatgatccagaatataggaaatttttagagaattattgtgctgatgaagag
aagatctgtgccaatcctgagattcttttgggagagattgaggccaaaacaagggaactc
attgctagaagaacaacaccccttttggaatatattaaaaatagaaaattagaaaagcag
agaatacgagaagagaaaagagaagaacgaagacggagggaattggagaagaaacgtttg
cgggaggaggagaaaaggaagcgcagagaagaagaaagacgtaaaagaaaagaagtggag
aagcaaaagaagatttctgaaaaagaaataaggatcaagcttcttaagaagcctgaaaaa
ggagatgaactggccagtgaaaagcacaaagaaaaaggtgaagaagctgacgttgaggaa
aacaaatgggataaatcacctggatctggaagtataaaatccaaatctttggagagttca
ccaaaaggacttaaggaaaagtcacaaaatgatagtgacaaagagcaaagagatttggag
agaagatttcgcgaaaaagaacctgaaagacaaaggtatcgattggatgatggcagaaag
catagaactcactatgagtttgacaagtttatgagaaggaatgaagaagagctgaaatgg
gggaaaggatacaaccaagacagaggaaagaaagggaactacagctacagcttcactgtg
gaggcagtagacaaactgggtaaagaggacaagtgtgatgacatggcatccaaaaaggag
cgcataagaaataaggatcgtccagccatgcagttgtaccagccaggagctcgcatccga
acacatatgggacctacaagtaaaacctatgactgcactgggaaatcctttgaagatgct
cttgataaaaagtatgaggcagataattcagctggagctagttctgaaaagaccgaagaa
gcagaataa
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