Hirundo rustica (Barn swallow): 120749086
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Entry
120749086 CDS
T09369
Symbol
SCAF4
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrt03021
]
120749086 (SCAF4)
03041 Spliceosome [BR:
hrt03041
]
120749086 (SCAF4)
Transcription machinery [BR:
hrt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120749086 (SCAF4)
Spliceosome [BR:
hrt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
120749086 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120749086
NCBI-ProteinID:
XP_039912142
LinkDB
All DBs
Position
2:complement(883084..915137)
Genome browser
AA seq
1092 aa
AA seq
DB search
MEAVNAFNQELFSLMEMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAAGTSATAPMAENATNNEGSPPPPAKVPSEPPQVTANSVPTVPQLP
SSDAFAAVAQLFQTTQGQQLQQILQTFQQPQKPQSPVIDNTVMAQVQAITAQLKTTAAQA
PEQKAAFTAPEQKTSFDKKLLDRFDYDDEPEAVEDSKKEDSAPSPSVSQPALTSLSFSAQ
AGWCSMPGGFPGEGMQQPVFPQLPNMDPFQQRMMGMQQDPMRHQVPLPPNGQMPGFGLLP
TPQFPPMAQPVMPPAAPVQPTFQSPFPVQAEPHLQKPHQQDMEVEQPPIQEGKRHVSDSR
KSRSRSASRSPKRRRSRSGSRSRRSRHRRSRSRSRERRRHSPKSRSQERRERERDRERRT
KGLPQIKAETVSVCSTTLWVGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVH
RQDANRALQKLSRGNFKVNQKSIKIAWALNKGIKPDYKQYWDVELGVTYIPWDKVKPEDL
ESFCEGGMLDNETLSPEWKGIPKKSENEVAQNGGAEAAHNEPVSPIPKALPVPIPVPMPA
PITVPPPQVPPHPSGPPVVGALQPPAFTAPLGIPPPGFAPGVPPPPPPPFLRPGFNPLHL
PPGFLPPGPPPPITPPVSVPHTPAVNIPNSTATGGNEDTTKESSVGNPIPTVVSGGRGNA
ESTDTSKIYGTVPPPVAPTNVPPPVTQAVPLLGTQGVAPPPPAPVVGLQTPSTGLLGARP
GLIPLQRPPGMPPPPPMPRFPMMPPRHMPPHMMHRGPPPGPGGFGMPPPHGMKAPFPPPG
HFVRPGGGPGGGGPGGGPEENRDGRQFRNDRQFTPGRDQERFGRRSFGNRAENDRERYGG
RDDREHERPGGRDRRDWGRRSPERDRHRDSEDRSRRSSGHRDRERDSRDRESRRDKEETR
GKEKPEVTDRAEGDKNHEPHGSKTEGADLVSELAAGDAEPTGAKPAPESVPEATSSLEQA
DKDTGSTAEAPR
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtgaacgccttcaaccaagagctcttctcactgatggagatgaaacctcct
atttcccgagcaaagatgattctcatcacaaaagctgccattaaagctattaagctctac
aagcatgttgtccagattgtggagaagtttatcaaaaagtgcaagccggagtacaaagtg
ccgggcttgtacgtcatcgactccatcgtgcggcagtctcggcaccagtttggaacagac
aaggatgtctttgggccaaggttctcgaagaatattactgccacattccagtatttgtat
ctgtgtccatctgaagacaagagtaaaatagttcgtgttctgaacctctggcagaaaaat
ggagtatttaaaattgaaataattcagcctctcttggatatggcagcaggaaccagtgcc
actgcacccatggcagagaatgctaccaacaacgaaggttcgccaccccctccggccaag
gttccctcggagcccccgcaagtgactgcgaactcagtgcccaccgtgccacagctgccc
agttccgatgccttcgcagctgtagcccagttgttccagacaacacaaggacaacagctc
cagcaaatcctgcagaccttccaacagcctcagaagccccagtcaccggtcatagacaac
actgtgatggctcaggttcaagctattactgctcagctgaaaaccacagcagcacaggcc
ccagagcagaaagctgctttcacagcccctgagcagaaaacatcatttgacaaaaagctg
ctagatcggtttgactatgatgatgaaccagaggcagtggaagattcaaagaaagaggat
tcagctccttccccctcagtgtctcagccggctttgacttctctctcattcagtgcacag
gctggatggtgctcaatgccgggtgggtttccaggagaaggcatgcaacagccagtattt
cctcagctcccaaatatggatccttttcagcagcggatgatgggaatgcagcaggatcca
atgcggcaccaggtgccacttcctccgaatgggcagatgccaggctttggtctcctgcct
accccccagttcccacccatggctcagccagtgatgcctccagcagcgccagtgcagcca
actttccagtctccctttccagtccaggctgagccacacctgcagaaaccccaccagcag
gatatggaagtggaacagccacccattcaggagggaaagcggcatgtttctgacagtagg
aaatcaagatccagatctgcatcaaggtcccccaagaggagacgctcgcggtcgggctcg
cgctcgcggcgctcgcggcaccggcgctcccgctcgcgctcccgggagcggcgccggcac
tcgcccaagtcccgctcgcaggagcggcgcgagcgcgagcgggacagggagcgccgcacc
aagggcctgccccagatcaaggcagagactgtcagtgtttgcagtaccacgctctgggta
ggacagctggacaaaaggacaactcagcaggacgtgggaagtctcctggaggagtttggt
cccattgagtcgatcaatatgataccgcccagaggatgtgcctacattgtcatggtgcac
agacaagatgccaacagagccctccagaaactgagccggggcaacttcaaagtcaaccag
aaatccatcaagattgcttgggctctgaataaaggaataaagccagactacaagcagtat
tgggatgtggagttgggtgtgacttacataccatgggacaaagtcaaacctgaagatctt
gaaagtttctgtgaaggaggaatgctggacaacgagacccttagtccggagtggaaggga
attcccaagaagtccgaaaatgaagtggctcagaatggaggcgcagaagctgcacacaat
gaaccagtgtcacctattcccaaagctttacctgtcccaattcccgttcccatgcctgca
ccaataacagtacctcctccgcaggttcctccccatccatcagggcctcccgtggttggt
gcactccagccccctgctttcacagcccctctaggaatcccccctcctggatttgctcct
ggggtgccgccgccaccgccgcctccgttcctccggcccggcttcaacccgctgcattta
cctccaggattccttcctcccgggccaccacctcccataactcctccggtctctgtccca
cacactccggcagtgaacatcccaaactctacagcaactggtgggaatgaggacactaca
aaggagtcgtctgtaggaaatcccatcccaacagtagtttctggaggcagagggaatgct
gaaagtactgacacttccaaaatctatggcactgttccacctcctgtagcacctaccaat
gtccctcctcccgtcacacaggctgttccactccttggcacccagggcgtggccccgccg
ccacccgcgcccgtggtggggctgcagactccgtccacggggctgctgggcgcccggccc
gggctgatcccgctgcagcgcccgccggggatgccgccgccgccgccgatgccgcgcttc
cccatgatgcccccgcgccacatgcccccgcacatgatgcacagagggcccccgccgggc
cccggcggcttcgggatgcctcctccgcacggaatgaaagcccccttcccgccgcccggc
cactttgtgcggcccgggggcggcccgggtggcggcgggcccggcggcgggcccgaggag
aacagggacgggcggcagttcaggaacgacaggcagttcacgcccggcagagaccaggag
cgcttcgggaggagatccttcgggaaccgggcggagaacgaccgggagcgctacggcggc
cgcgacgaccgggagcacgagcggccgggcggccgcgacaggcgagactggggacgccgc
agccccgagcgcgacaggcacagggactcggaggacaggagcaggcgctccagcggccac
cgagacagggagagggattccagggatcgggagtctcgtagagacaaggaagaaacccgt
ggcaaggaaaagccggaggtgacagacagggcggaaggcgacaaaaaccacgagccccac
ggcagcaaaacggagggcgcggaccttgtttcagaactcgctgcgggagatgctgaaccc
acgggtgcgaaacccgcgccagagtcggtgcccgaggctacctcatccctggaacaggcg
gacaaggacacgggctccacggcggaggcgccgcgctag
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