Hirundo rustica (Barn swallow): 120749237
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Entry
120749237 CDS
T09369
Symbol
IFT88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hrt03037
]
120749237 (IFT88)
Cilium and associated proteins [BR:
hrt03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
120749237 (IFT88)
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Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_7
TPR_8
TPR_19
TPR_14
TPR_6
TPR_16
ANAPC3
TPR_11
TPR_17
TPR_10
ARM_TT21_4th
TPR_9
TPR-S
TPR_15
ARM_TT21_5th
TPR_CcmH_CycH
ARM_TT21_C
DUF2989
TPR_21
HAT_PRP39_C
TF_Otx
DUF6584
Motif
Other DBs
NCBI-GeneID:
120749237
NCBI-ProteinID:
XP_039912392
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Position
2:45062437..45104675
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AA seq
827 aa
AA seq
DB search
MLSTKANVAFLRKMMQNVHLAPENNEDDLYSGYNDYNPMFDTEDLENDVAFQQAARTSHG
RRPPVTAKIPGTSSPRPLATGFGSKATSSMGRPMTGTIQDGVSRPMTAVQAAGYTKAAVR
GSSFDPLGQARGPASPLEKKTSDSLEEKMKQLEKKVNELVEESCVAHNCGDLKLALEKAK
EAGRQERELLRQREQIAPPESINLDLTYTVLLNLASQYVANEMYAEALTTYQVIVKNKMF
SNGGILKVNMGNIYLKQRNYSKAIKFYRMALDQITSCHKHMRIKVMENIGVAFIKTGQYV
DAISSFEEIMSISPNLKAGFNLILCYFAIGNGEQMKKAFKNLIEVPLEVDYDDKYISLND
DLHTNLLIEAIKIDSLSQIERERKSLAEEYIMTAAKLIAPAIETSFAVGYDWCVDAVKAS
HYVELANDLEINKATTYLRQQNFNQALETLKMFEKRDTRVKSAAATNLSFLYYLGNELEQ
ATNYADLAVNSDRYNPAALTNKGNTVFANGDSEKAAEFYKEALRNDSLCTEALYNLGLAY
KKLNRIDEALDCFLKLHAILPNSAQVLYQLASIYQIMEDHNQAIEWLLQLISVVPTDPHV
LSKLGNLYDTEGDKSQAFHYYCESYRYFPSNIEVIEWLGAYYIDTQFCEKAIEYFERAAL
ILPTQVKWPLMVASCYRRSGNYQKALEKYKVIHRKFPENVECLRFLVRLCTDMGLKEVQE
YITKLKKAEKLKEIREQRVKSGRDGSARSRKEGSGDSGGTKGERLSAKLKALPGTSEPYE
SSSSKEIDASYTDPLGPQPERPKTAARKRTEEDDFADEELGEDLLPE
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgttatcgacgaaagcaaacgttgccttcttgagaaaaatgatgcaaaatgtgcatctg
gctcctgagaataatgaagatgatctctattctggctacaatgattataatcccatgttt
gacactgaggatttagaaaatgatgtagcttttcaacaggcagcaagaacaagtcatgga
agaagaccccctgtgacagccaaaattcctggtacatcaagtccaagacctctagctact
ggatttgggtcaaaggcaacttcatctatgggaagacccatgacaggaactatacaggat
ggggtttctcgaccaatgacggcagtgcaagctgcaggttacactaaagcagctgtgaga
ggttcttcatttgatcctcttggccaagcaagaggtcctgcttcacctctggaaaagaaa
acttcagacagtttagaagagaagatgaagcagttggaaaaaaaagtgaatgaactggtt
gaagaaagctgtgttgctcataactgtggagacttgaaattggctctggaaaaagcaaaa
gaggctggaagacaggaacgagaattgttgagacagcgtgaacaaatcgctcctccagaa
agcatcaacttagacctcacttacacagttctcctcaatctggccagtcagtatgttgcc
aatgaaatgtatgctgaagcgctgactacttaccaagttatagtgaagaataagatgttc
agcaatggaggtatactgaaggtaaatatgggaaatatatatttaaaacaacggaactat
tccaaagcgatcaaattctaccgtatggctctagaccagattactagttgccacaagcac
atgaggataaaagtaatggagaatattggcgttgcgtttattaaaactggccagtacgtt
gatgccatttcttcatttgaggaaatcatgagcatatccccaaacctgaaggcaggcttc
aacctgatcctgtgttactttgctattggaaatggtgagcaaatgaagaaagccttcaaa
aacctcattgaagttcccttggaagtggattatgacgacaaatacatttcattaaatgat
gatctacatacgaatctactgattgaagccattaaaattgacagtttaagtcaaatagaa
cgtgagaggaagtccttggcagaggaatacatcatgacagctgctaaactcattgcgcca
gcaatcgagacatcttttgcagtaggctatgactggtgtgttgatgcagtgaaagcttcc
cactatgtagagttagccaatgatctggaaataaataaagccactacttacttgaggcaa
cagaattttaaccaggcactggagactttgaaaatgtttgaaaaaagggataccagagta
aagagtgcagctgcaacaaacctttcattcctttattatttggggaatgaattggaacaa
gcaactaactacgcagatttagctgtgaattctgataggtacaatccagcagctctaact
aacaaaggaaatactgtttttgcaaatggagactctgaaaaagcagcagaattttataag
gaagctctcaggaatgattccttatgcactgaagcactttataatcttggtttagcttac
aagaagttaaacaggatagacgaagctttggattgctttctgaaactccatgcaatcctt
ccaaatagtgctcaagtcctttaccagctagcaagcatataccagatcatggaagatcac
aatcaagccatagagtggctgctgcagttgatcagtgtagtaccaactgatccacatgta
ctttcaaagctagggaatttatatgatactgaaggtgataaatcccaagcttttcattat
tactgtgagtcctaccggtatttcccttccaacattgaggtcattgaatggcttggagcg
tattacattgacacccagttctgtgaaaaagccattgagtactttgaaagggcagcactt
atcctgccgacacaagtgaagtggccgctgatggttgccagttgctacaggagaagtggc
aactaccagaaagctctggagaaatacaaagtcattcacagaaaattcccagagaatgtt
gaatgcctccgatttttagttcgtctctgcacagacatggggctgaaagaagtccaggaa
tatataacaaagctcaagaaagcagaaaaattaaaagaaattagagagcagcgcgttaaa
tctggcagagatggcagcgcacgtagccgcaaagaaggaagtggtgatagtggtggtacc
aaaggggagagactgagtgccaaactaaaagctctgcctggaacaagtgaaccctatgaa
agtagcagcagtaaagaaatagatgcctcctacacagatccacttggcccacaaccagaa
agaccaaaaacagcagcaagaaaaagaacggaggaagatgattttgctgatgaagaacta
ggagaggatctgcttccagagtag
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