Hirundo rustica (Barn swallow): 120749324
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Entry
120749324 CDS
T09369
Symbol
FREM2
Name
(RefSeq) FRAS1-related extracellular matrix protein 2
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120749324 (FREM2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
hrt04091
]
120749324 (FREM2)
Lectins [BR:
hrt04091
]
C-Type lectins
Lecticans
120749324 (FREM2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Big_9
HYR
Motif
Other DBs
NCBI-GeneID:
120749324
NCBI-ProteinID:
XP_039912545
LinkDB
All DBs
Position
2:52321332..52440843
Genome browser
AA seq
3164 aa
AA seq
DB search
MQPLPAGPRRMLAGLLLLLAGCAWAGAAEPPPGSGAAVSSPWSPEAAPVVVANRGLRVPL
GRSAWLDPARDLVLQVQPGDRCHLTVLDEDPLWQRPGRLSPRRFPCDFGAREVQYSHLGG
RSPARDRVRLQLRYDSPSRSLVLPLVLEVEVLFTQLEIVTRNLPLTVERLRGTSNPLDAR
SLEFAFEPGRQRCRVGLLPLLAGLPRYGEILNYPPGATGGAGEAAGGGPMPSAMWDCEEF
LRLGLRYRHTAAGGSPNRDLVPLVAELREAAGGGALLKREYFQVLVRIRAGTENVAPKPS
FLAMLMMEVDQFVLTALTPDMLSAEDAESPPDLLLFNITSPFGPGQGHMVSTDDRSLPVT
SFSQRDVRELRIAYQPPMEDSDRERLFELELEVLDPEGAASEPFAFVIVVKPMNTLAPVV
TRNTGLVLYEGQSRPLSGPGPSPNLVVSDEDDLEQVRVSVVAGLRHGHLTLLEDTPGPAA
PRKHFTVAELAAGRVIYQHDGSESPLSDNLVLRLEDGGSRHRVEFLFPITLVPTDDQPPL
LNANTGLAMAEGETVPITTRALSATDIDSQDAILLFTVESGPMAGQLLLRQAQPPPGWEE
EEEEEGFSWRKVPGVAGSSLIYEKPVREWLQQDIVEGRLFYHHFGAHSPGPGVVLDQFIF
RVQDDNDPPNRSGPQTFVIRVHPVDRLAPELHSSSSLHLIVAEQQVTPLRRKHLCYTDQD
SGDRELRYTVIQPPTDTDSNHPPEAYGAHLGSLVLTEDHSVEVTHFTQAQINHHKISYRP
PQEELGVAPHLIQFQYQVQDAAGNAAKGTFTIYLQPVDNQPPEITNTGFSLPEGGSHVLS
PTELDASDTDTELGRLRFILTQAPRYGQLQLSGYSLVPGGIFGLEDIRQGRVVYVHSGAE
TSSDICRLDVSDGVHFVPITLKMSVHPVDDEVPTLRLPPGTLGSYLDVLENGAAEITANV
IQGTDEDTDDFMLTFVVEDPPQHGSILVQGVPAERFSQRDLLDGAVVYAHTGGEIGLLPK
EDAFNLTLSDLSEKWRVRGNVVQGVSVLVTILPVDSQAPEIFVGEQFTVTEGDKRVITLA
HLRAEDVDTPSDDILCTIVSQPTSGYVENISPAPGSEKSRAGVAISAFTLKDLRQGHIFY
VQSIHKGVEPVEDRFALRCSDGINFSQRHFFPIVIVPINDEEPEVFLREFVVMEGMSLVI
DTPILNAVDADVPADVLMFTITRLPRHGHIVNQLVNGTVLVESFTLDQITESSNILYEHD
DSETRADSFEVQLTDGKHTVRKMVPIMVVPVDDETPRMAINDGLEIEIGETRTINNRILK
ATDLDSEDKTLTYIISYGPGQGLLQRIKPSGGAENITLGMNFTQDEVDRNLIRYVHFGQQ
GVRDLIKFDVTDGINPLIDRYFYVTIGSVDIVFPDVVSKGVSLKEGGKVTLTTDLLSTSD
LNSPDENLVFTITRPPVRGHLECTDQPGVPISTFTQLLLAGNKVYYIHTSEDEVKMDSFE
FEVTDGYNPVFRTFRISISDVDNKKPVVTIHNLVLSENEYKLITPFELTVEDRDTPDALL
KFVITQIPVHGQIMFNNSKTVTTFTKQDLNENLISYKHDGSESVEDSFSFTVTDGTHTDF
YVFPNTVFETRKPQTMKIRIMAVDNSVPQVVINKGAQTLRVLATGHIGFLITNKVLKVED
RDSLHVTLKIKITEGPRHGFLIHLGKGNHSISQFTQADIDDMKICYVLRGGDNATSDIFH
FLVEDGGGNKLNNQHFRLNWAWISLEKEYYLVNEDSKYLDVVLKRRGYLGETSFISISTK
DGTAKKDKDFRGKAQKQVQFNPGQTLATWRVRILSDGEHEHSESFQIVLSEPVMAILEFP
AVSTVEIIDPGDESTVFIPQSTYTIEEDVGELFIPVRRSGDVSQELMVICYTQQGTASGT
APTSVLSYSDYISRPEDHNSVLRFDKDEREKMCRVVIIDDSLYEEAETFDVLLSMPMGGR
IGAEFPSTRITIVPDKDDEPAFYFGDDEYSVDESAGYIEVRVWRMGTDLSKAASVTVRSR
KSEPVTAEAGVDYVGISRNLDFSPGVNMQTFRVIILDDLGQPVLEGTEKFELVLRMPMNA
ALGEPSKTTIFINDSVSDLPKMQFKESVYIANENDGRISAMIYRSGDIRYTSTVRCYTRQ
GSAQVMMDFEERPNIDSSIITFLPGETEKPCTLVLVDDTFHEEEEELRLVLGTPRSDSSF
GASIGEQNETLIKIRDDADKAIIKFGETKFSVSEPKDTRQVAIVKIPVLRLGDTSKVSVV
RVHTKDGSATSGEDYHPISEEIEFREGETQHFVEIEVLFDGVREMREAFTVHLKPDENMV
AEIQTAKAIVYIEEMNSMADVTFPSVPQVASLLLYDDTSKAKDRPSPIAGYPVICITACN
PKYEDFDKTGSICASENINDTLTRYRWLVSAPTGPDGVTSPMKEVDFDTFFTSSKMITLD
SIYFQAGSRVQCAARAVNSDGNEGLELMSPIVTISTSEGLCQPRISGVVGAEPFSAKLRY
TGPEDPDYANLIKLTVTMPHIDGMLPVISTRELSNFELTLSPDGTRVGNHKCSNLLDYTE
VKTHHGFLTDSTKNPDVIGETFPYQYSPTIRGFNTLRFYRNLNLEACLWEFISYYDMSEL
LTDCGGTIGTDGQVLNLVQSYVTLRVPLYVSYVFHSPVGVGGWQHFDLQSELRLTFVYDT
AILWKDGIGSPPEAELQGSLFPTSMRISEEGRLVVNFKTEARFHGLFVMSHPASSLTSMV
MSADHPGLTFSLSLIRSEPTYNLPVQQWSFVSDFAVRDYSGTYTVKLIACTTAPHQEYSL
PVICNPREPITFDLDIRFQQVSDPVAAEFSLNTQMFLLSKKMLWLSDGSMGFGQESDVAF
SEGDVIYGRVMVDPVQNLGDSFYCSIEKVFLCTGADGYVPKYNPSNTEYGCLADSPSLLY
RFKIVDKAQPETQATSFGNVLFNAKLAIDDPEAIPLVKQPGSDGFKVDSTPLFQVSLGRE
WYVHTIYTVRSKENANRGIGKRSVEHQYHSLLSAGSPGASTRRRQKRGAEQAPELARDIG
AENNRGTNIQHIALDRNSRKQVPQREVALNGVLPRELNNQSAGISLVTIIGGAAAIFLAI
CLIAIIILLLKWKQNSDKKESTNESGSNEPMMLPHNYSNDSSEV
NT seq
9495 nt
NT seq
+upstream
nt +downstream
nt
atgcagcctctcccggccgggccgcggcggatgctggccggcttgctgctgctgctggcc
ggctgcgcctgggctggggcggcggagccgccgccaggcagcggcgccgcggtctcctcg
ccgtggtcgccggaggcggcccccgtggtggtggccaaccgcgggctgcgggtgcccctg
ggccgctccgcctggctggaccccgcgcgggacctggtgctgcaggtgcagccgggggac
cggtgccacctcaccgtgctggacgaggacccgctgtggcagcgcccgggccgcctgagc
ccccggcgcttcccctgcgacttcggagcccgcgaggtgcagtactcgcacctgggcggc
cgcagccccgcccgggaccgcgtccgcctgcagctgcgctacgactcgccgagccgctcc
ctggtgctgcccctggtgctggaggtggaagtgctcttcacccagctggagatcgtcacc
cgcaacctgcccctcaccgtggagcgcctgcggggcaccagcaacccgctggacgcccgc
agcctggagttcgccttcgagcccggccggcagcgctgccgggtggggctgctgccgctg
ctggccgggctgccccgctacggagagatcctcaactacccgccgggggcgacgggcggg
gccggggaagcggcggggggcggcccgatgccctccgcgatgtgggactgcgaggagttc
ctgcgcctggggctgcgctaccggcacacggccgccggcggctccccgaaccgcgacctg
gtgccgctggtggccgagctgcgggaggcggcgggcggcggggcgctgctgaagcgcgag
tacttccaggtgctggtgcggatccgcgccgggactgagaacgtggctcccaaacccagc
ttcttggctatgctgatgatggaggtggaccagttcgtgctcaccgccctcacacctgac
atgctgtcagctgaggatgcggagtcaccgcccgacctcctgctcttcaacatcacctct
ccctttggtcctggacaaggccacatggtcagcacagatgaccggagcttacccgtcacc
tctttcagccagcgggatgtgcgggagctgcgcattgcctatcagccacccatggaggac
tctgatcgggagcggctctttgagcttgaactggaagtgttggacccggagggtgctgcc
tcagagccctttgccttcgtgatcgtggtgaagcccatgaacaccctggcacctgtggtc
acccgcaacactggtctcgtgctctatgaggggcagtcaaggcctctctcaggcccaggt
cccagccccaacctggtggtcagtgatgaggatgacctcgagcaggtgcgggtgagtgtg
gtggcagggctgaggcacggccacctcactctcctggaggacactccaggacctgctgcc
cctcgtaaacattttacagtggctgagctagcagcaggccgagtcatttaccagcacgac
ggcagcgagtctccgctcagtgacaaccttgtgctgcggctggaagatggtggctctcgc
catcgcgttgagttccttttccccattaccctggtgcccaccgatgaccagccaccccta
ctcaatgctaacacagggcttgccatggctgagggggaaacagtgcccatcaccacccgt
gctcttagtgccactgacattgactcacaggatgcaatcctgctcttcacagtggagtct
ggccccatggctgggcagctcctgctccgtcaagcacaaccgcctcctggctgggaagag
gaggaagaagaggagggcttttcttggaggaaggtgccaggtgtagcagggagctccctt
atctatgaaaagccagtgagagagtggctgcaacaggacattgtggaagggcgactcttt
taccaccactttggggctcacagccctggccctggggttgtgttggaccagttcatcttt
agagtccaggatgacaatgacccacccaaccgctctggaccacagacttttgtgatcagg
gtacatcctgtagacagattagccccagagctccacagcagcagcagcctgcatttaata
gttgcagagcagcaggtgacccccctccgcaggaagcacttgtgttacacagatcaggac
tctggggaccgtgaacttcgctacacagtaatccagccccccactgacactgactccaac
caccctcccgaggcatatggagcgcaccttggatccctcgtgctgactgaggatcactct
gtggaagttacgcacttcacccaagcccagatcaaccatcacaagatctcgtaccgcccc
ccacaggaagagctgggggtggcccctcatttgattcagttccagtatcaagtgcaagat
gcggctggcaatgcagccaaagggactttcaccatctacctgcagccggtggataaccag
ccccccgaaatcactaatactggattcagtttgcctgagggaggcagccatgtccttagt
cccactgagctggatgccagtgacacggacactgaactcggccgtctcagatttatcctg
acccaggctcctcggtatggccagttgcagctctctgggtacagtctcgttccaggaggt
atctttggcctggaggatatcagacaaggcagagtggtgtatgtgcacagcggagctgag
acaagcagtgatatctgcaggcttgatgtgagtgatggggttcattttgtgcccatcaca
ctgaaaatgagtgtgcacccggttgatgatgaggttcctacgctacgattgcccccaggc
actcttggatcctacctagatgtgctggagaatggtgctgctgaaatcactgctaatgta
attcagggcacggatgaggatacagatgactttatgttgaccttcgttgtagaggatcct
cctcagcatgggagcatcctggttcaaggggtgcctgcagagagattttcccagagagat
ctgctggatggtgctgtggtatatgctcacactggtggcgaaataggccttctgcccaag
gaggatgctttcaaccttaccttatctgacctctctgagaagtggcgtgtcaggggcaat
gttgttcaaggagtttcagtcttggtgaccattcttcctgttgacagtcaagctccagag
atttttgtgggggagcagttcacggtgacggaaggtgacaaacgggtcattactcttgct
cacctcagggctgaagatgtggatactcctagtgatgatatactatgcacaattgtttct
cagcccacatctgggtatgtggagaacatctctcccgccccaggatctgaaaaatccagg
gcaggtgtagctataagtgcttttaccttgaaggacctccgtcaagggcatattttttat
gtccagagtatacataagggcgtagagcctgttgaagacagatttgctttgcgctgttct
gatggcattaacttttctcagaggcacttcttccccattgttattgtgccgatcaatgat
gaagagccggaagtcttcctgcgagagtttgttgtgatggaaggcatgagcctggttatt
gatacccctatcctcaatgcagttgatgcagatgtccctgctgatgtgttaatgttcaca
atcaccaggcttcccaggcacggccacattgtgaaccagctggtcaacggaactgtcctg
gtggagagcttcaccttggatcagataacggagagctccaacattctctacgaacacgat
gactctgagacaagggcagacagttttgaggtgcaactcacagatggtaaacacactgtt
aggaaaatggtacctatcatggtcgttcctgtagatgatgagacgcccagaatggccatc
aatgatggtttggagattgaaataggggaaactagaactattaataacagaatattgaag
gctactgatcttgattctgaagacaaaaccttgacatatattataagttacgggccagga
caaggcctcttacagagaataaagccttcaggtggagctgaaaatatcaccctgggaatg
aacttcacccaagatgaagtggatagaaatttgattcgatatgtgcattttggccaacaa
ggagtccgtgatcttatcaagtttgacgtgacagatggaataaatcctctcattgaccgc
tacttttatgtgacaataggcagcgttgatattgtcttcccagatgtcgtcagcaaagga
gtttctctgaaggaaggaggaaaggtaacccttactactgatttgcttagtactagtgac
ttgaatagtccagatgagaacttagttttcaccattaccagaccacctgttcgtggtcat
cttgaatgcacagatcagcctggggtacccatctccactttcactcaactcctgttagca
ggcaataaagtctattacattcatacttcagaagacgaggtgaaaatggacagctttgag
tttgaggtgactgatggctataaccctgtgtttcgtactttcagaatttctatcagtgat
gtggacaataagaaacctgttgtcacaatccataacctggtgctgagtgaaaatgaatac
aaactgataaccccatttgaactgaccgtagaagacagagatacacctgacgcactgcta
aaatttgtcatcactcaaataccagttcacggccagatcatgttcaataactccaaaaca
gtcaccaccttcactaaacaagatctgaatgaaaatctaatcagctacaaacatgatggc
tcagaatcagttgaggacagtttctctttcactgttacagatggcactcatactgatttc
tatgttttccccaacactgtgtttgaaacaaggaaacctcagactatgaagattcgaata
atggctgtggacaacagtgtacctcaggttgtaataaataagggtgctcagactctccgt
gttctggccacaggtcatatcgggtttctgattaccaacaaagtcctcaaagtggaagac
agggacagtttacatgttactcttaagatcaaaatcacagagggtccacgccatggcttc
ctgattcacctggggaaaggcaaccatagcatcagccagttcacccaagcggatattgat
gatatgaagatatgctatgttttacgagggggtgacaatgccaccagtgacatttttcat
tttttggttgaagacggtggaggcaataagctgaataatcaacattttcgcctaaactgg
gcatggatctccttagaaaaggagtattacttagtaaatgaagactccaagtatcttgat
gttgttcttaaacggagaggttacctgggagaaacctcttttataagcattagcaccaaa
gatggtactgccaagaaagataaagacttcagaggaaaagctcagaagcaagtgcagttt
aaccctggtcaaaccttagctacatggcgagtacggattttgagcgatggtgaacatgaa
cattctgagtcctttcaaattgttctttctgagcccgtcatggcaattctggaatttcct
gctgtatccacagtggaaattattgacccaggagatgaatcaacggtctttattcctcag
tccacctacactattgaagaagatgttggtgagttatttattccagtcagaagaagtgga
gatgtgagtcaggaactgatggtcatctgctacacacaacaaggaacagcatctggcact
gccccaacctctgtgctttcctactctgactacatctccaggccagaggatcacaacagc
gttctacgttttgacaaagacgaacgagaaaagatgtgtcgtgtcgtcatcatagatgat
tccttgtatgaggaggctgagacctttgatgttttgctgagcatgcccatgggtggaagg
atcggtgcagaattcccaagcactcgcattaccattgtacctgacaaggatgatgaacca
gcattctactttggagatgatgaatactctgttgatgagagtgctggctacattgaggtc
cgtgtctggaggatgggaaccgacctgtccaaagctgcctcagttacggtgaggtctcgc
aaatccgaaccagtaactgcagaggctggagtagattatgtaggcatcagtcgtaatttg
gatttttcccctggagtcaatatgcagacatttcgtgtgataattctggatgatcttgga
cagccagtcttagaaggaacagagaagtttgagcttgtgctaaggatgcccatgaatgct
gcccttggagaacccagcaagaccaccatcttcattaacgattcagtgtctgatttgcca
aagatgcagtttaaagaatctgtgtatatagccaatgaaaatgatgggcggatttctgcc
atgatatataggagtggggatatccgatacacatccactgtgaggtgctatacaagacaa
ggttcagctcaggttatgatggacttcgaagaacgtcctaatattgacagttccatcatc
acattccttcctggtgaaactgagaagccttgcacactggtgcttgtggatgatactttc
cacgaggaggaggaggaactacgcctggttcttggcacgccaagaagtgattcttccttt
ggtgcctctattggcgagcagaatgagacgctgataaagattcgggatgacgcagacaag
gctattattaagtttggtgagaccaaatttagcgtgagtgaaccaaaggacacaaggcaa
gtagcaattgtgaaaatcccagtgcttcgtctgggagacacttccaaagtttctgttgtg
agagttcatacaaaggatggatctgctacttctggggaagactatcaccctatatcagaa
gaaattgagttcagggagggtgaaacacagcactttgtggagattgaagttctctttgat
ggagtaagggagatgagagaagctttcactgttcacctgaagcctgatgagaacatggtt
gcagaaatacagacagccaaggccattgtttacatcgaggaaatgaacagcatggcagat
gtcacctttccctctgtccctcaagttgcatctctgttgctatatgatgatacttctaaa
gccaaagacagacccagtcccattgctggctatcctgtcatctgtatcacagcttgtaat
cctaagtatgaagactttgacaagactggttctatatgtgccagtgagaacatcaatgat
actctgacacggtaccggtggcttgtaagtgcccccactggccccgatggtgtgaccagc
cccatgaaggaggtcgactttgacaccttcttcacttcctccaagatgattacgctcgac
tccatttactttcaagctggttctcgtgtccagtgtgcagctcgggctgtgaattcagat
gggaatgagggtcttgagcttatgagccctattgtcactataagcacatcagaaggtctt
tgtcagcctcgtatatcaggagtagttggagcagagccattctctgccaagctgcgctac
acgggcccagaagatcctgactatgccaacctcatcaaactgacagtcacaatgccacat
attgatggcatgctgcctgttatttctacaagagagctctccaacttcgagctgacactt
agccctgatggaactagagttggaaaccataagtgctccaacctgttggactacacagaa
gtaaagacccaccatggttttttaactgactctaccaagaatccagacgtgattggagag
acctttccctatcagtacagcccgacaattagaggcttcaataccttgcgcttctaccgc
aacctgaacctggaagcctgtttgtgggagttcattagctactatgacatgtccgagctc
ctcacagattgtggaggcaccattgggacagatgggcaggttctcaacctagtgcagtcc
tatgtcacgctgagagtccctttgtacgtctcttacgttttccactctcctgtgggcgtc
ggaggctggcagcacttcgacctgcagtcagagctccggctgacttttgtgtatgacact
gccatcctctggaaggatgggatcggcagcccacccgaggcagagctccaaggttccctg
ttccccaccagcatgcgcatcagtgaagaggggcgcttggttgtcaacttcaagactgaa
gcccggtttcatggtctctttgttatgtcccatcctgcttcatctctaacttccatggtt
atgtcagccgaccacccgggcctgacttttagcctcagcctcatccgaagtgagcccacc
tacaacctgcccgtccagcagtggagcttcgtttcagacttcgcggttcgagactattct
ggaacgtacacggtgaagctgatagcctgcaccactgccccacaccaggagtacagcctg
ccagtgatctgcaatcctagagagcccatcactttcgatctcgacatccgattccagcag
gtcagtgacccagtggctgctgagttcagcttgaacacccagatgttcctcctgtccaaa
aagatgctgtggctgtctgatggctcaatgggctttgggcaagaaagtgacgttgctttc
tcagaaggtgatgtcatatacggtcgggtgatggtggatccagtgcagaatttgggtgat
tccttctactgtagcatcgagaaggttttcctgtgcacaggagctgatggatatgtaccc
aaatataatccatccaacactgaatatgggtgccttgctgattctccatcccttctgtac
aggtttaagattgtggacaaagctcagccagaaacgcaagccacaagctttggaaatgta
ctttttaatgcaaaacttgcaatagatgatcctgaagcaattccattagttaaacagcca
ggctctgatggatttaaagtagactcaacccctctgtttcaggtgtctttgggtagggag
tggtatgtccacacaatctacactgtgcgttccaaggagaacgctaaccgcggaatcggc
aaaagaagcgtggagcaccagtaccactctctcctcagtgctgggagcccaggagcctcc
acacggagaaggcagaagaggggagctgagcaggccccagaacttgcaagagacattgga
gcagagaacaaccgaggaacaaatatacagcacatagctctggatcgcaacagcaggaaa
caggtgcctcaaagggaggtggcactcaatggtgttctccccagggaactgaataaccaa
agtgcaggaatcagcttagtcacaatcattggtggagctgctgccattttccttgccatc
tgcttaattgcaattatcattttgctgctaaaatggaaacaaaattctgacaagaaggaa
agcacaaacgagtcaggcagcaacgaaccaatgatgctgccacataattacagcaatgac
agctcagaggtttga
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integrated database retrieval system
