Hirundo rustica (Barn swallow): 120750103
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Entry
120750103 CDS
T09369
Symbol
HBS1L
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120750103 (HBS1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120750103 (HBS1L)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120750103 (HBS1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GIP1_N
Motif
Other DBs
NCBI-GeneID:
120750103
NCBI-ProteinID:
XP_039914238
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Position
3:58901569..58970490
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AA seq
687 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDVYGQSVEDDYCISPSTAAQFIYSRRDKPATFAEPLEEEYG
YEGTDAAADCFTPTHQLTEVDRARLNSCLDQMREVLAESIPEQVMVQAVLDTNFDVQKAL
NLVLSQGSKQNVKTKNKDAVILAKTTKGKTRDSQSARTESEIVPKITKMTVSGKKQSMGF
EVPCALAEENGHPNTPQKGLLPEDASVASAVLEAVSKSTLSPQVVQVSEDQNMVPTPAKK
SSKARPQIDVKAELEKRQGGKQLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYEQ
ESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETPTKVITLMDAPGHKDFIPNMIT
GAAQADVAILVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQER
FQEITSKLGQFLKQAGFKESDVAYIPTSGLGGENLVTRGQSSDLTQWYKGNCLLEQIDSF
KPPQRSVDKPFRLCVADVFKDQGSGFCVTGKIEAGFIQVGERLLAMPPNETCTAKGITLH
DEPVDWAAAGDHVSLTLTGMDIIKINVGCVFCDPKEPIKVCTRFRARVLIFNIEVPITKG
FPVLLHYQTVSEPATITRLLSVLHKSTGEVTKKKPKFLAKGQNALIELQTQRPVALELYK
DFKELGRFMLRYSGSTIAAGVVTEIKE
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacaggaacgttcgaggatataactacgacgaagactttgaagatgatgat
gtgtatggccaatcagtagaagatgattattgcatctctccttcaacagcagctcaattt
atttactccagacgagacaaaccagccacgtttgctgagccattagaagaagaatatggc
tatgaaggtaccgatgctgctgctgattgttttacacccactcatcagttgactgaagtt
gacagagctcgtcttaattcatgccttgatcaaatgagagaagttttggcagagtccata
ccagaacaagtgatggtgcaagcagtactggatactaattttgatgttcaaaaggctctg
aatcttgtgctttcacaaggcagtaagcaaaatgtgaagaccaagaataaggatgctgtg
attttagcaaagactacaaaaggaaaaacaagggattcccagtcagccagaacggaatct
gaaattgtgccaaaaattaccaaaatgacagtgtctggaaagaaacaatctatgggattt
gaagttccatgtgcgcttgctgaggaaaatggccaccctaatacacctcagaaagggctg
ttacctgaagacgccagtgtggcttctgcggtactggaggctgtctcaaaatctactctt
tcaccccaagtagtgcaggtttcagaagaccagaatatggtgcctactccagcaaaaaag
tcaagcaaggcaagaccacaaatagatgtgaaagcggagttggagaagagacaaggagga
aagcaactgctgaatttggtggtaataggacatgttgatgcaggcaaaagtactttaatg
ggtcatttgctctaccttttgggaaatgtaaacaaaagaactatgcacaaatatgaacag
gaatctaaaaaggctggtaaagcttcatttgcctatgcatgggtcttggatgaaactggt
gaagaaagagaaaggggagtgacaatggatgtgggtatgaccaaatttgagacaccaact
aaagtaattacactgatggatgctccaggccacaaagacttcattccaaatatgatcacc
ggagctgcacaggctgatgtggcaattttggttgtggatgccagcagaggagaatttgag
gcaggctttgagacgggtggacaaactcgagaacatggattattagtgcgctctcttgga
gtgacacagttggccgttgcagtcaataaaatggaccaggtcaattggcaacaggaaaga
tttcaggaaattacaagtaaacttggccaatttcttaagcaagctggatttaaggaatca
gatgtggcttatatcccaacaagtggccttggtggtgaaaatctagtcacaaggggtcag
tcaagtgacctcacacaatggtataaaggaaactgtttgttagagcaaattgattctttc
aagccaccacagagatcagtggataaaccatttagactgtgtgttgctgatgtttttaaa
gaccaaggttcaggattttgtgtgactggtaaaatagaagcaggctttattcaggttgga
gaacgacttctggcaatgcctcccaatgaaacttgcactgcaaaaggaatcacactgcac
gatgaaccagttgattgggctgcagcaggagatcacgttagtctcactttgaccggcatg
gatatcatcaaaatcaatgtgggctgtgtattttgtgatcccaaggaacccattaaagtt
tgcactcggttcagagctcgggttctcatcttcaatattgaggtcccaatcactaaagga
tttcctgtgcttttacactatcaaacagtaagtgaacctgctactattacaagactatta
agtgtcctgcacaaaagcactggtgaagtgacgaagaaaaagcctaagttcttggctaaa
ggtcagaatgctctaatagaactacagactcaaagacctgttgctctagagttgtacaaa
gattttaaagagctggggaggtttatgttacgctacagtggttccactattgctgcagga
gttgttacagagattaaagaatga
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