Hirundo rustica (Barn swallow): 120750149
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Entry
120750149 CDS
T09369
Symbol
DDX1
Name
(RefSeq) ATP-dependent RNA helicase DDX1 isoform X1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrt03041
]
120750149 (DDX1)
03016 Transfer RNA biogenesis [BR:
hrt03016
]
120750149 (DDX1)
Enzymes [BR:
hrt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120750149 (DDX1)
Spliceosome [BR:
hrt03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120750149 (DDX1)
Transfer RNA biogenesis [BR:
hrt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120750149 (DDX1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
CMS1
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
120750149
NCBI-ProteinID:
XP_039914353
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All DBs
Position
3:104731722..104751778
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AA seq
740 aa
AA seq
DB search
MAAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQMEGKKGKATIKTGGAVLNKWQMNPYDRGSAFAIGSDGLCCQSREIKEWH
GCRATRGVTKGKYYYEVSCHDQGLCRVGWSTMQASLDLGTDKFGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYLDTEKGQIKFSKNGKDLGLAFEIPPHIRNQALFAACVLKNAELKF
NFGEEDFKFPPKDGYVGLCKAPEGSVVKSQHSGNAQVVQAQNLPNAPKALIVEPSRELAE
QTLNNVKQFKKYVDNPKLRELLIIGGVAARDQLSVLEQGVDIVVGTPGRLDDLVSTGKIN
LSQVRFLVLDEADGLLLQGYSDFINRIHSQIPQITSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVPVNPKADKLWERLGKNHIRTDEVHAKDNTRPGAN
TPEMWSEAIKILKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDRKGHQF
SCVCLHGDRKPQERKQNLERFKRGDVRFLICTDVAARGIDIHGVPYVINVTLPDEKQNYV
HRIGRVGRAERMGLAISLVAKEKEKVWYHVCSSRGKGCYNTRLKEEGGCTIWYNEMQLLG
EIEEHLNCTIAQVEPDIKVPVDDFDGKVTYGQKRALGGGLYKGHVDILAPTVQELAALEK
EAQTSFLHLGYLPNQLFRTF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgttctcggaaatgggtgttatgcctgagatagctcaagcagtggaggagatg
gactggcttctccctacagatatccaagcagaatccatcccgttgatcttgggaggtggt
gatgtacttatggctgctgaaactggaagtggaaaaactggtgctttcagcattcctgtt
atccagattgtttatgaaacactgaaagaccaaatggaaggcaagaaaggaaaagccact
attaaaactggaggagcagtgctcaataaatggcaaatgaacccctatgacagaggatca
gcttttgcaatcggatcggatggtttgtgttgtcaaagcagagagataaaagaatggcat
ggatgcagagcaactagaggcgtgactaaagggaaatactactatgaagtttcctgtcat
gaccaaggcttgtgcagagttggttggtcaactatgcaggcttcactggatctgggcact
gataaatttggctttggctttggtggcactggtaagaaatctcacaacaagcaatttgac
agctatggtgaggaattcactatgcatgacacaattgggtgttatctagacacagaaaaa
ggacaaataaaattttccaaaaatgggaaggaccttggccttgcatttgaaatcccacca
catattaggaaccaagcactttttgcagcttgtgtactgaagaatgctgaattgaaattt
aattttggtgaagaggatttcaagtttccaccaaaagatggctatgttggtctttgcaag
gctcctgagggtagtgttgtaaaatcacaacactcaggaaatgcccaagtggttcaagca
cagaaccttccaaatgctccaaaagcattaattgtagaaccgtcaagagagctggcagaa
caaactttgaacaatgtgaagcagttcaaaaaatacgttgataatcccaaattaagggaa
ctgctaattattggtggagttgctgcaagagatcaactctctgtactggaacaaggtgtg
gatattgtcgttggaactcctggaaggctggatgacttggtctcaacagggaagattaat
ttatcgcaagttcgattcctggttctggatgaagctgatggccttctcctccaaggttat
tcagatttcataaacaggatccacagtcaaattcctcaaataacatcagatggaaagaga
cttcaggtgattgtgtgctctgcaacactgcattcttttgatgtgaaaaaactatctgaa
aaaatcatgcattttcctacctgggttgatttgaaaggagaagattctgtccctgagact
gtacaccatgtagttgtgcctgtaaatccaaaagctgataaactctgggaaaggcttggc
aagaatcatatcagaactgatgaagtacatgcaaaagacaatacacgacctggcgctaac
actccagaaatgtggtctgaagctattaaaattctgaaaggagaatacactgttcgggca
atcaaagagcataagatggaccaggccattattttctgcaggactaaaatagactgtgat
aatatggagcagtacttcatccagcagggcggaggccctgatagaaagggacatcaattt
tcatgtgtctgtctacatggtgatagaaaacctcaagaaagaaagcaaaacctggaaaga
tttaagagaggagatgtccgtttcttgatttgcacagatgttgctgctagaggaattgat
attcatggtgttccatatgttatcaatgtgacactccctgatgaaaaacagaactatgtt
catcgaattgggagagtcggcagagctgagaggatgggtttggcaatctcccttgtggca
aaagagaaagaaaaggtttggtatcatgtatgcagtagtcgtggaaaagggtgttataac
actagactgaaggaagaaggaggttgtaccatatggtacaatgagatgcagttgctgggg
gagattgaagaacacttaaactgcactattgcccaagttgaaccagacataaaagtacca
gtggatgattttgatgggaaagttacatatgggcagaaaagagctctgggtggtggactg
tataaaggccatgtggatattctggcacctacagtacaagaattggctgcccttgaaaag
gaggctcagacatctttcttgcatcttggctatcttcctaaccagctgttcagaacattc
tga
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