Hirundo rustica (Barn swallow): 120750349
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Entry
120750349 CDS
T09369
Symbol
PNLDC1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X2
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120750349 (PNLDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120750349 (PNLDC1)
Enzymes [BR:
hrt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120750349 (PNLDC1)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120750349 (PNLDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
120750349
NCBI-ProteinID:
XP_039914883
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All DBs
Position
3:58510054..58521470
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AA seq
503 aa
AA seq
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MEFTGLHSTSLQNNEPSLFDSPAERYVKARHSVQRFALVQLGLAIFSKENSNKYLVHSYN
FFLFPSTLGIKDVEFTLSASSIQFLSHYGFDYNKFLKDGIPYMNEVQEKILRQRLLAGTW
KVCSTSNADRDVLKKAIDEVTSWIAAAKEEDTMILQDLNGYHMLDIQLVLRQALENVWTE
PLGDKKVMVKKVSPEHRQLLENTSYDHCQKKLILLSARGFTNLFQILVKAKKPLVGHNML
LDLMHLHDKFYRPLPESYEEFKRNIHNLFPVIIDTKTVTKYVQKKCLFPRVSSLLETYAV
LCSNLNSKGPPCPVITLASGCSRYAEKKFPHEAGYDAFLCGSVLLMSAHLLLCRSTDDAV
EADPSFSRYLTVLAEHVNKVNFIRGGVPSINFSGEDAPCRHPPALVVHVRGWPELTERQI
YQEFKAHCRFDVRRLSKNQFILLSNKYKHVRLVLRDYRHHPHLQVSVYRHWRHSPSVNCL
LQISGIVALWSLLAFVLGGARSC
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggagtttactggtttgcattcaacttccctacaaaacaacgagcccagcctgtttgac
tcccctgccgagcggtatgtgaaggccaggcacagtgttcagcgcttcgctctcgttcag
cttgggctggctatattctcaaaagaaaattcaaacaagtatctggtgcattcatacaac
ttttttctcttcccctcaacactgggaataaaggatgtcgaattcaccctctctgcatct
agtattcagttcctgtctcattatggctttgactacaacaagttcctcaaagatggaatc
ccatacatgaatgaggtacaggagaagatccttaggcagcgcctcttagcaggcacctgg
aaagtctgcagcactagtaatgcagacagggatgtcctgaagaaagctattgatgaagtg
acctcttggatagctgcagcaaaagaagaggatactatgattctgcaggatctgaatggc
taccatatgcttgacattcagctggttctgaggcaggctctcgaaaatgtttggacagag
cctcttggagacaagaaggtaatggtgaaaaaagtgagtccagagcatcgtcagcttctg
gagaacacttcttacgaccactgtcagaaaaaactcattctcctgtctgcccggggcttc
accaacctcttccagatacttgttaaagccaagaagcccctggtgggacacaacatgctt
ttggaccttatgcatcttcatgacaagttctacaggcccctcccagaaagctatgaggag
ttcaaaaggaacattcacaacctgtttcctgtcatcatagacaccaagactgtaacaaaa
tatgtgcaaaagaaatgtctgtttcctcgagtatccagtcttttggagacatatgcagtt
ttgtgcagcaacctaaattccaaaggtccaccatgccctgttataactcttgcaagtggc
tgctcgagatacgctgagaagaaatttcctcacgaggcaggctatgatgcatttctctgt
ggttcagttcttctgatgtcagctcatttgctactgtgcagatccacagatgatgcagtg
gaggccgatccttctttctcgcggtatctcaccgtgttagctgagcacgtgaacaaagtg
aatttcatccgagggggtgttccaagcattaatttttctggggaagatgctccttgccgt
catcctcctgccttggttgttcatgtccgaggctggccagagctgactgagagacagatt
taccaagagtttaaagctcattgtcgctttgacgtcagacggctttcaaagaaccagttc
attctgctctccaataaatacaagcacgtcaggctcgtcctgcgggattacaggcaccac
cctcacctgcaggtctccgtctatcgccactggaggcactcgccgagcgtgaactgcctg
ctgcaaatctctggtattgtggcactgtggtctctcttggcctttgtgcttggaggagct
cgtagctgttga
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