Hirundo rustica (Barn swallow): 120750584
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Entry
120750584 CDS
T09369
Symbol
CPSF3
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120750584 (CPSF3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrt03021
]
120750584 (CPSF3)
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120750584 (CPSF3)
Transcription machinery [BR:
hrt03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
120750584 (CPSF3)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120750584 (CPSF3)
U7-dependent histone pre-mRNA processing factors
120750584 (CPSF3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
120750584
NCBI-ProteinID:
XP_039915375
LinkDB
All DBs
Position
3:101549968..101567612
Genome browser
AA seq
691 aa
AA seq
DB search
MAAKRKAEALIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDAL
PYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV
SNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVK
LLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRG
GRGLIPVFALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKI
RKQININNPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVI
IAGYCVEGTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPH
VILVHGEQNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGSLADK
KPEQGQRISGILVKRNFNYHILSPCDLSNYTDLAMSTVTQTQAIPYTGPFNLLYYQLQKL
TGDVEEIEIQQKPALKVFKNITVIQEPGMVVLEWVANPANDMYADTVTTVILEVQSNPKI
QKAAVNKISKKIDMDVYRKRMEIMLQDMFGEDCVSSKDDSVLCITVDGKTANISLDTRTV
DCEPGSEDDESLREMVELAAQRLYDALSPVY
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaagcgcaaagctgaggcgctgatcccggccgaggagagcgaccagctgctc
atccggcccctaggtgctggccaagaagtaggaaggtcatgcatcattctggagtttaaa
ggaagaaaaataatgcttgattgtggaatccatcctgggctggaaggaatggatgctctt
ccttacattgatttgatagatccagctgagattgatctcctcctcattagtcacttccat
ttagatcactgtggggctttgccgtggtttttacagaaaacgagttttaagggaaggaca
tttatgactcatgccacaaaagctatttacagatggcttctctcagactatgttaaagtc
agtaacatctcagcggatgacatgctctacacagaaacagaccttgaagaaagcatggac
aagattgagaccatcaacttccatgaagtgaaggaggtggcagggatcaaattctggtgc
taccacgccggccacgttctgggagcagccatgtttatgattgaaatagccggtgtgaag
ctgctatatacaggtgatttctcaaggcaggaagacagacacctgatggcagctgagatt
cccaatattaagcccgatattcttataattgaatccacatatggcactcacattcatgag
aagagggaagagcgggaggcgagattctgcaacaccgttcacgacatcgtgaacagaggg
ggccgagggctcatccctgtgtttgccctgggtcgagctcaagagctgctcctaatctta
gatgaatactggcagaatcatcctgaactccatgatatccccatatactatgcctcctct
ttggcaaagaagtgtatggcagtttatcagacgtatgtcaatgccatgaatgacaaaatc
cgcaagcaaattaacatcaacaatccttttgttttcaagcatattagcaatctgaagagc
atggatcactttgatgacattggcccaagtgttgtgatggcttctccaggtatgatgcag
agtggcttatccagggagttgtttgagagctggtgcacagataagagaaatggagtcatt
attgcagggtactgtgttgaagggactcttgctaagcacatcatgtctgaacctgaagag
atcacaactatgtcagggcaaaagctcccactgaagatgtctgtggattacatttctttc
tctgctcacacagattatcaacaaactagtgaatttatccgggccctgaaacctccacat
gtgattttagttcatggtgagcagaatgaaatggccagattgaaagcagcattgatacgg
gagtatgaggataatgatgaagttcatatagaagttcataatccgaggaatactgaagct
gtgacattaaacttcagaggagaaaaacttgccaaggtgatgggatctttagcagataag
aaaccagagcaaggacagagaatttctggaatcctagttaaaagaaattttaactatcac
atcctttctccatgtgacctctccaattacacggacttggcgatgagcacagtgacacag
acacaagccattccctacacgggccctttcaacctgctttattaccagctgcagaaactc
accggtgacgtagaagaaatagaaatccaacaaaaaccagccctgaaggttttcaaaaat
attactgtgatccaggaaccaggcatggttgtccttgagtgggtggcgaatcctgctaat
gatatgtatgcagacactgtgacaacagtgatactggaagttcagtcaaatcccaaaata
cagaaagctgcagtaaataagatttcaaaaaaaatagatatggatgtatataggaagaga
atggagatcatgcttcaggatatgtttggagaggactgtgtgagctccaaagatgactct
gtcctgtgcatcacagtggatgggaagactgccaacatttccctggacactcggacagtt
gactgtgagccaggaagtgaagatgacgaatcccttcgtgaaatggtggaactggcagca
cagaggctttatgatgccctcagcccagtatactga
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