Hirundo rustica (Barn swallow): 120750882
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Entry
120750882 CDS
T09369
Symbol
AFDN
Name
(RefSeq) afadin isoform X1
KO
K05702
afadin
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04517
IgSF CAM signaling
hrt04520
Adherens junction
hrt04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
120750882 (AFDN)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
120750882 (AFDN)
04530 Tight junction
120750882 (AFDN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RA
DIL
PDZ
FHA
PDZ_6
RA_3
PDZ_2
RA_2
RASSF8-10_RA
Yop-YscD_cpl
Motif
Other DBs
NCBI-GeneID:
120750882
NCBI-ProteinID:
XP_039915899
LinkDB
All DBs
Position
3:41334453..41451123
Genome browser
AA seq
1849 aa
AA seq
DB search
MSGGGGSREEERRKLADIINHWNANRLDLFEISDPTEDLEFHGVMRFYFQDKAAGNFATK
CIRVSSTATTQDVIETLAEKFRPDMRMLSSPKYSLYEVHVSGEERRLDVDEKPLVVQLNW
NKDDREGRFVLKNENDTLPPKKAQSNGPEKQEKEGVIQNFKRTLSKKEKKEKKRREKEAL
RQASDRDDRLLHGDDIENFRLAAEVYKDMPETSFTRTISNPEVVMKRRRQQKLEKRMQEF
RSSDGRPDSGGTLRIYADSLKPNIPYKTILLSTTDTADFAVIEALEKYGLEKENPKDYCI
ARVMLPPGAQHSDDKGAKETILDDDECPLQIFREWPSDKGILVFQLKRRPPDYVPKKTRK
ITDGKPLKGKERVDGSAYGSCLPPEKLPYLVELSPGRRNHFAYYNYHAYEDGSDSRDKPK
LYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSIDAETYVEGQRI
SETTMLQSGMKVQFGSSHVFKFVDPTQDHIISKRSTDASLMVKGPRHKTGAVQETTFDLE
GDIHSGTALPASKSTSRLDGDRASSASSTAERGMVKPMIRIDQQDYRRQDSRSQDTHGPE
LILPASIEFRESSEDAFLSAIINYTNSSTVHFKLSPTYVLYMTCRYVLSSQYRPDITPAE
RTHKVIAIVNKMVNMMEGVIQEVDQVDQKQKNIAGALAFWMANASELLNFIKQDRDLSRI
TVDAQDVLAHLVQMAFKYLVHCLQSELNNYMPAFLDDPEENNPQRPKIDDVLHTLTGAMS
LLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTAPDSGLCSHYWGAIVRQQLGHIEAWAE
KQGLELAADCHLSRIVQATTLLTMDKYSHADVPNINSTCFKLNSLQLQALLQNYHCAPDE
PLIPTELIENVVTVAENTADELARSDGREVQLEEDPDLQLPFLLPEDGYSCDVVRNVPSG
LQEFLDPLCQRGFCRLTPHPRSPGTWTIYFEGADYESHLSHENAELAQPLRKEPEIITVT
LKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQ
ERAAELMTRTGSVVTLEVAKQGAIYHGLATLLNQPSPMMQRVSDRRGSGKPRPKSEGFEL
YNNSTQNGSPESPQLPWTEYSEPKKLPGDDRLMKNRADHRSSPNVANQPPSPGGKNAYAS
GTTTKITSVSTGNLCTEEQILPPRPEAYPIPTQTYTREYFTFPASKSQDRMGPAQSQWPN
YEEKPQLQAESNHSINTTMQRVARSQEELRDKVFQPERNRLEVVIRKDVEYIDRKSDSDQ
WMNSSVDSSTSSQEHLNHSSKPVSPGSCLTKSGPGRWKTPATSQPTPVAISQPIRTDLPP
PPPPPPVHYAAEFDELQMDLPLPPPPPPNQVGAQASSQVAAAERKKREEHQRWYEKEKAR
LEEERERKRREQERKLGQMRSQPLIPAQPVVPPVSLQQVKAEKPSTLQRSQETVIRELQP
QQQPRTIERRDLQYITISKEELSSGDSLSPDPWKRDAKEKLEKQQQMHIVDMLSKEIQEL
QNKPDRTAEENDRLRKLMLEWQFQKRLQESKQKDEDDDEEEDDEVDTMLIMQRLEAERRA
RQTAVPAISVLDLLQDEERRRQQQLEEMRKREAEDRARQEEERRQQEEERTRREAEEKRR
QEEEYYSRLEAERRRQHDEAERRLLEPDEPGLYRPPLPREYELPSPTPSSNAPPPPPQRN
TSYLKTQVLSPDTIYTAKFVAYNDDDEEEEDSNLAGINSYTGSTGAAAGEVYRDPRDKRS
KSQDADLPGAPENLTFRERQRLFSQGQDVSNKVKASRKLMELENELNTK
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcggcggcagccgggaggaggagcggcgcaaactcgccgacatcatcaac
cactggaacgcgaaccggctggacctgttcgagatcagcgaccccaccgaggatctcgag
tttcatggagtaatgagattctactttcaagacaaagcagctggaaattttgcaacaaaa
tgtatccgtgtctctagtactgccaccactcaagatgtgatagaaactcttgcagagaag
tttcgaccagacatgcgaatgttgtcatcccctaaatactcactttatgaagtgcacgtc
agtggagaagaaagaagattagatgtggatgagaagcctcttgttgtacagttaaactgg
aacaaagatgatcgcgagggaaggtttgtcctcaagaatgaaaatgatacacttcctcca
aagaaagctcagagtaatgggcctgaaaagcaagaaaaagagggagtaattcagaatttc
aagcgaaccctctcaaaaaaagagaaaaaagaaaaaaagaggcgtgaaaaagaggcattg
cgacaagcgtcagatagagatgacagacttcttcatggggatgatattgagaattttcgc
cttgcagctgaggtttacaaagatatgcctgagactagcttcactcgcacaatatccaat
cctgaggtggtcatgaaacggcggcgacagcaaaaactagagaagagaatgcaagagttt
cgcagctctgacggcagaccagactcaggtgggacgctgcgaatttatgcagacagttta
aaaccaaatataccatacaagacaatcctgctgtccactacagatactgcagactttgca
gttattgaagcactggaaaaatatggcctggaaaaagaaaatcccaaggattattgtatt
gctcgtgtcatgctgcctcctggtgctcagcactctgatgataaaggtgctaaagaaact
attcttgatgatgatgagtgtccactgcagatattcagggagtggcctagcgataaagga
atactggtctttcagttgaaaaggcggcctcctgattatgtcccaaagaaaaccaggaag
ataactgatggaaagccattaaaggggaaggaaagagttgatgggtctgcctatggctcg
tgccttcctcctgagaagctaccgtacctggtagaattaagcccagggagaaggaatcac
tttgcctactacaactatcacgcttacgaagatggttctgactccagagacaagccaaag
ctctatcgtctacaattaagtgtcactgaagtcggaactgaaaaatttgatgacaattcc
attcagttatttggtccaggaattcaacctcatcactgtgacctcactaatatggatgga
gttgttactgtcaccccgagaagcatcgatgctgaaacctatgtggaaggtcagcgtatt
tcagaaaccaccatgctgcaaagtggaatgaaggttcagtttgggtcttctcatgtattt
aagtttgtggatcctactcaggaccatattatttccaaaagatctactgatgcaagtctc
atggtcaaaggtccgagacacaaaactggagctgtccaggaaaccacatttgatctggag
ggagatattcacagtggaacagcattaccagcaagcaagagcaccagcaggctggacggt
gacagggcatcgtccgcatccagcacagccgagcgaggaatggtgaagccaatgattaga
atagaccagcaggattaccgcagacaggacagcagatctcaggatacccatggaccggaa
ctgatactgcctgccagtattgaattcagggaaagctctgaagatgccttcttatctgcc
attataaattacaccaatagctcgacagttcattttaagctgtcaccaacgtatgttttg
tatatgacatgtcggtatgtattgtccagccaatacagacctgacatcactcctgctgag
cgtactcacaaagtcattgcaatagtcaacaagatggtgaacatgatggaaggagtgata
caggaggtagaccaggttgatcagaaacagaagaatattgctggggcccttgccttttgg
atggcaaatgcatctgaactactcaatttcataaagcaagacagagatcttagccgaatt
accgtggatgcacaagacgtcttggcacacttggttcaaatggcattcaagtacctggtt
cattgtctgcagtcagaacttaataactacatgccggcattccttgatgatccagaagaa
aataatcctcagaggcctaaaatagatgatgtgctgcataccttgactggagccatgtcc
ctattgcgacgctgtagagtgaatgctgctctgaccatacagctcttctcccagctgttt
cattttatcaacatgtggcttttcaaccgattagttacagccccagattcagggttatgt
tcacattactggggagctatcgttcggcaacagctcggccacattgaagcctgggcagaa
aaacaaggtttagaattggctgctgattgccacctgagcagaatagtgcaggcaaccaca
ttgcttaccatggacaaatactcacatgcagatgttccaaatattaatagtacttgcttt
aagctgaattctctgcagctacaagctttgttgcagaattatcactgtgctccagatgaa
cctctcatcccaacagaattgatagagaatgtagtaactgtcgcagaaaacacggctgac
gaacttgctcgcagcgatggccgagaagtccagctggaagaggatcctgacttacagcta
ccttttcttttaccagaagatggctattcctgtgatgttgtcagaaatgttccaagtggt
ttacaagaatttttagatccactctgtcaaagaggtttttgtagactaacacctcatcca
cggtcaccaggcacatggacaatatactttgaaggcgcagattatgaaagtcacctgtcc
cacgagaatgctgagctggctcagcctttgaggaaagaacctgaaattatcactgtaaca
ctaaaaaaacaaaatggaatgggactgagcattgttgctgccaagggtgctggtcaagac
aaacttggaatatatgtcaagtctgttgtgaagggaggtgctgcagatgtggatggtcgt
ctggccgcaggggatcagttgcttagtgtggatggtcgaagtttggtgggcctgtcccag
gagagggcagcagaacttatgactaggacaggttctgtagtaacattagaagtagcaaaa
caaggagcaatttaccatggtctggcaaccctgcttaatcagccatccccgatgatgcaa
agagtttctgaccgccgtggctcaggtaaaccccgaccaaagagtgaaggttttgagctg
tataacaactccacgcaaaatggatcacctgagagtcctcagctgccctggacggagtac
agtgaaccaaagaagctgccaggggatgacagattgatgaagaacagagctgatcatcgt
tccagtcccaatgtagcaaatcagcctccaagccctgggggaaagaacgcttacgcatct
ggaactaccaccaaaataacctcggtctctactggaaatctttgtacagaggaacagatt
ctgccaccacgacctgaagcttatcctatcccaacacagacgtatactagagagtatttc
acattcccagcttctaagtcccaggatcgaatgggtccagctcagagtcagtggccaaat
tatgaagaaaaaccacagctccaggcagaaagtaatcattctatcaatactaccatgcag
cgtgtagctcgttcccaggaagagctcagagacaaagttttccagccagagaggaatcgt
ttggaagttgttatacggaaggatgtggagtacattgatcggaagtcagacagcgatcag
tggatgaactcatctgtggattctagcacatctagccaggaacacctgaaccattcctcc
aaacccgtgtcgcctggttcctgtttaactaaaagtggacctggccgttggaagactcca
gccactagccagccgactccagtggccatttcccagcccatcagaacagatcttccccct
ccaccaccacctcctccagtgcattatgctgccgaatttgatgaactgcaaatggatttg
cctctgcctcccccacctcctccaaatcaggtaggagcacaagcatcctcccaggtagct
gctgctgagcgtaaaaaaagagaagagcatcagaggtggtatgaaaaggaaaaggcacgt
ttggaagaagaacgagaaaggaaacgtcgtgagcaggagagaaaactgggccaaatgcgt
tctcagccactgattcctgctcagcctgtggttcctcctgtctcccttcaacaagtgaaa
gcagaaaaaccctcgactttgcagaggtctcaagaaacagttattcgagagctgcagccc
caacagcagccacggactattgagcggagagatctgcagtacattactatcagcaaggaa
gaactgtcctctggtgatagcctctctccagatccgtggaaacgggatgcgaaggagaaa
ctggagaagcagcaacagatgcacattgtggacatgctgagtaaagagattcaggaactt
cagaacaagcctgatcgtacagcggaagaaaacgaccgcctccgcaaactcatgcttgag
tggcagttccaaaagcgactgcaagaatcaaagcaaaaggatgaagatgatgatgaagag
gaggatgatgaggtggatactatgctcatcatgcagcgactggaggcagaaagaagagca
aggcagactgctgtgccagcaatctctgttctagatttgttacaggatgaagaacgcaga
cggcagcaacagttggaagaaatgcgaaaacgagaagcagaagacagggccaggcaggaa
gaagagcgccgacagcaagaggaggagcggaccaggagagaggctgaagaaaagaggcgc
caggaagaggagtattacagtcgcttagaggctgaaaggcgcaggcagcacgatgaagct
gagcgacgattgctggaacctgacgagcctggtctgtacagacctccgcttccacgggaa
tatgaactcccatccccaaccccttcatctaacgctcctcctcccccacctcagcgaaac
acctcttacctcaaaacacaggtcctctcccctgacacgatttatactgccaagtttgtt
gcatacaatgatgatgatgaggaggaggaggattccaatctagcaggaataaattcatac
actggatctacaggagcagctgctggggaggtttatcgggatccaagagacaaaagatct
aaaagtcaagatgcagatttacctggagcaccagaaaacttgacgttcagggaacgccag
cgacttttttcacagggtcaggatgtatccaataaagtaaaagcttcgaggaaactaatg
gaactggaaaatgagttgaacacaaaataa
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integrated database retrieval system
