Hirundo rustica (Barn swallow): 120750950
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Entry
120750950 CDS
T09369
Symbol
MSH2
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120750950 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120750950 (MSH2)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120750950 (MSH2)
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
120750950
NCBI-ProteinID:
XP_039916066
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Position
3:complement(16332158..16378470)
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AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGVGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTRAVIRQLAGAPGTQKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSAADGQRVVGVGCVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGDTAGEMGKLRQVIQRGGILVTDRKKADFTTKDI
VQDLNRLLKSKKEEQLNSAALPELEKQVAVSSLSAVIKFMELLSDESNFGQFELTTFDLS
QYMVLDNAAVRALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELCQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMYQAINQLPNV
VQALEKHQGTHQMLLLAVFITPLTDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSILKTAAKELGLEAGKSIKLETNSQFGHHFRVTCKEEKALRNNS
KYAIIDTQKNGVKFTNSKLSAINDEYIRNREDYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVVLEKGQGRIVLKGARHPCIEVQDEVAFIPNDVTF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNISKSKGSEGEPPAKKLYREREEGEKIIQDFLCQVKXMPLTD
MSEEDIKVKLKQLRNDVLAKNNSFVNEIISRAKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccccgggaggccgtgtggcccgagggcgtgggggccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcgcggctggccgcccgcgagctcttc
cgcacccgcgccgtcatccgccagctggcgggggcaccgggcactcagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaggaaaatgactgg
tatttagcttacaagggctctccaggaaatcttgcacagtttgaggaagttctctttgcc
aacaatgatatgtccacagccatcggggttgtgggggttaagctgtctgctgctgatgga
cagagagtagtaggagtgggctgtgttgacactactctgagaaaactgagtgtttgtgag
ttcccagataatgatcagttctcaaaccttgaagctctactggttcaactgggcccgaag
gagtgtgtgctgccaggaggagacactgcaggagagatgggaaaactgagacaagtcatt
cagaggggaggaatcctggttacagacaggaagaaggcagatttcacaacaaaggatatt
gttcaggatctcaatcgcttgttgaaatcgaaaaaggaagagcagctgaacagtgcggca
ctgccagagttggaaaagcaggttgctgtttcgtctttgtcagccgttatcaagtttatg
gagttgctgtcagatgagtctaattttggacaatttgaactgactacttttgatcttagt
caatatatggttctagacaatgcagctgttcgagccctcaacctttttcagagttctgtg
gaaaatgcaaatactgcacagtctctagctggcttactgaataaatgcagaacccctcaa
ggacaaagactagttaatcagtggatcaaacaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagagctatgtcagtgccttcaa
gaagatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacctacaagactgttaccgaatgtaccaggctatcaatcaactgcctaatgtt
gtacaagcactagaaaaacatcaaggaactcaccagatgttgttgttggctgtatttata
acacctcttactgatatctgctctgacttctcaaagtttctggagatgatagaaacgaca
ttggacatggaaaaggtggagaatcacgaatttcttgtcaaggcttcttttgatcctaat
ttaacagaattgagagagaagatgaatgaactggaagaaaaaatgcagtccatactaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggagacaaattca
caatttggacatcactttagggtaacttgtaaggaggaaaaagctctccgtaacaattca
aaatacgcaatcattgatacgcagaagaatggtgtgaaatttactaacagcaagctgagc
gccatcaatgatgaatatataaggaacagggaagattatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagcccattcagacgatgaatgat
gtgatagctcagctggatgccattgtcagctttgcccacgtgtcaaacggagcgccggtg
ccctacgtgcggcccgtcgttctggagaagggacagggcaggatcgtgctgaagggtgcc
aggcatccctgcatcgaagtgcaggatgaggtggccttcatccccaatgacgttacattt
gagaagggcaagcagatgttccacattattaccggccctaacatggggggaaaatcaaca
tacatccgacagacaggcgtgattgttcttatggcccaaattgggtgttttgtgccgtgt
gagtccgcagaaataaccattgtggattgtatcctggctcgagtgggagcaggagacagc
cagctgaaaggagtgtctactttcatggctgaaatgctggaaactgcctcaatccttagg
acagcaactgaaaactccctgataatcattgatgagctgggaagaggaacttctacctac
gatggctttggcttagcatgggccatctcagaatacattgccagcaaaatctgtgggttt
gccatgtttgctacacactttcatgagctcacagcgcttgctgaccaagtgccaacagta
aataacctccatgtcacggctctgaccagcgatgacacactgacgatgctttatcgtgtc
aaggaaggtgtttgtgaccagagttttggaatacatgtagccgagttggcggctttccca
aaacatgtgatagaaagtgcaagagagaaagcgttggagctggaggagtttcaaaacatt
agcaagtccaagggatctgaaggagaaccaccagccaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaangcatgcccctgacagat
atgtcagaagaagacatcaaagtcaagttgaaacagctgagaaatgatgtgctggcaaag
aacaacagttttgtgaatgaaataatttctcgagcgaaagttacatcgtga
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