Hirundo rustica (Barn swallow): 120750964
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Entry
120750964 CDS
T09369
Symbol
MSH6
Name
(RefSeq) LOW QUALITY PROTEIN: DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120750964 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120750964 (MSH6)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
120750964 (MSH6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
PWWP
MutS_II
Motif
Other DBs
NCBI-GeneID:
120750964
NCBI-ProteinID:
XP_039916095
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Position
3:complement(16181555..16195272)
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AA seq
1237 aa
AA seq
DB search
MEGYPWWPCLIYNHPTERTIVRGKGKSTRIHVQFFDDSPTRGWVSVKYLKPYKGSSDGET
KKGGMFYSTSLKFKRAMVLADDAMSKDETKRLELAVCNEPSDTEEEEEEIEEMSEDASDN
SEDCNSEEDVKSKKRVMSRERAVKAKRRRVLDSDSDHDGSDVEFKPDGKEAASSEEASSG
VDENESSDTEAESVAESPIKVPSKRKRSEVKKPAKKSSLGNECSATPKRAATVSSEAKSK
LTSFAAPESFESQANAGSSGGTGGISVWEHEKLDWLQEGRRRDAHRRRQGDPDYDPCTLY
VPEDYLNKCTPGVRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLIFMKGTWA
HSGFPEIAFGRFSDVLVQKGYKVARVEQTETPEMMEARCKSVGHSTRFDKVMRREICRII
TKGTQTYSVMDCDPSENHSKFLLCVKEKCDSAGTRVYGVCFVDTSMGKFHVGQFPDDRHC
SRFRLWXLITTPVQVLFEKGNLSVETQKILKGSLVSCIQEGLTSGSQXWDASKTLKVLLE
EGYFKEKQNSENGCSLPSVIRSLTSESDSLGLTPGENSELALSALGGCVFYLKKCLIDQE
LLSQANFEEYVPVDIATAKTMSSGSLFARTGQRMVLDGVTXMNLEVLQNGTNGTTEGTLL
ERIDSCCTPFGKRLLKQWLCAPLCNPKSINDRLDAXEDLLAVPDKMSEVSEYLKKLPDLE
RLLSKIQQLGHHSKSQNHPDSRAVFYEELKYSKKKIADFLSALEGFKVMNEIVEIIEEFA
SDFKSRVLRQLVTPQSKVPDGRFPDLSAELTRWDTAFDHKQARKTGVITPKAGFDADYDG
ALRDIRTIQEDLRKYLDKQRKLLGLKSVQYWGTGKNRYQLEIPESAVSRNLPREYELRSS
RKGYKRYWTKEIEKMLAAMVNAEERRDAALKDCMRRLFYNFDKNSKGLADSCVECIAVLD
VLMSLAHYSQGGDGPLCRPVILLPTDNAAPFLELRNSRHPCITKTFFGDDFIPNDIVIGI
KDEGSSSEASCVLVTGPNMGGKSTLMRQAGLLAVMAQLGCYVPAEACRLTPIDRVFTRLG
ASDRIMAGESTFFVELSETSSILQHATEHSLVLVDELGRGTATFDGTAIASAVVKELAER
IRCRTLFSTHYHSLVEDYSHSGAVRLGHMACMVENESEEDPSHETITFLYKFIEGACPKS
YGFNAARLADIPEEVIQKGHRKAKVFEKTTLSLRIFR
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttatccctggtggccgtgtctcatatacaaccaccccactgaaagaacaata
gtcagaggaaaaggaaaatccactcgtatccatgtgcagttctttgatgacagccctaca
agaggttgggtcagtgttaaatacctgaagccatataaaggttcatcagatggggagacg
aagaagggaggtatgttttacagcacaagcctgaaatttaaaagagccatggtgctggca
gacgatgccatgagcaaagatgaaaccaagaggcttgaactggcagtatgcaatgaacct
tcagacacagaggaggaagaggaagaaattgaggagatgagtgaagatgcatcagacaac
agtgaggactgcaatagtgaggaggatgtgaaaagcaaaaagcgagtgatgagcagggaa
agagctgtaaaagccaagagaaggagagtgttggattctgacagtgaccatgatggctct
gatgtggagttcaagcctgatgggaaagaagcagcaagcagtgaggaagccagtagtggg
gtggatgaaaatgagtcttctgacactgaggcagagagtgttgcagagagccccataaaa
gtcccttctaaacgaaagagaagtgaggtgaaaaagcctgctaaaaagagtagcttggga
aacgaatgttctgcaacacccaaaagagcagcaacagtctcttcagaagccaagtctaag
ctgacatcgtttgcagcacctgaaagttttgaatctcaagcaaatgctggcagctctgga
ggcactggtggcatctcagtgtgggaacatgaaaagcttgactggctgcaagaagggagg
aggagagatgcacacaggaggcgtcagggtgaccctgattacgacccctgtactctgtat
gtgcctgaagattatctcaacaagtgcacgccgggtgtgcggaggtggtggcagctcaaa
agtcaaaactttgatgctgtgatttgctacaaggttggaaagttctatgagttgtatcac
atggacgcagtcactggtgtgaatgagttgggcctgatctttatgaagggcacctgggca
cactcaggttttccagaaattgcgtttggccgattctccgatgtcctggtgcagaagggc
tacaaggtggcgcgcgtggagcagacggaaacgcctgaaatgatggaagcgcgctgcaag
tcagtgggccactccaccaggtttgacaaggtgatgcgccgggagatctgcaggatcatc
accaagggaacccagacctacagcgtcatggactgcgacccctccgagaaccacagcaag
ttcctgctgtgcgtgaaggagaagtgcgactcagccgggacgcgcgtgtacggggtctgc
tttgtcgacacctccatggggaagttccacgttggccagttcccagacgaccgccactgc
tccaggtttagactatggtagctcattacaacccctgtgcaggtgctgtttgagaagggg
aacctgtctgtggaaacacagaagatactgaagggctcacttgtttcctgcattcaggaa
gggctgacctcaggttcccagntctgggatgcatctaaaacactaaaagtccttcttgag
gaaggatatttcaaggagaagcagaattctgaaaatggatgttctctgccctctgtaatc
agatctctgacttcagagagtgactccctgggattaactcctggtgaaaacagtgaatta
gctttgtcagctcttgggggatgtgtcttctatctcaaaaaatgtctgattgatcaggag
ctgttatcacaggcaaactttgaggaatacgtccctgtggatattgctactgcaaaaacc
atgagttcaggtagtttgtttgccagaactggccagcggatggtgctggacggagtcacc
ntgatgaacttggaagtcctgcagaatggaaccaatggaaccacagaaggtactttgttg
gaaagaattgattcttgttgtacaccatttgggaaacgactcctgaaacagtggctctgc
gctccactttgtaatcctaaatccatcaatgatcgtttggatgctngtgaggacctcctg
gcggtgccagataaaatgtctgaagtcagtgagtacctcaagaaattgcctgaccttgaa
agactgctcagcaaaattcaacagttgggtcaccactcaaaaagtcagaaccatcctgac
agcagggccgtcttctatgaagaactcaaatacagcaaaaaaaaaatcgctgactttctg
tctgccctggagggattcaaagtaatgaatgaaattgttgaaattattgaggagtttgcc
agtgacttcaaatccagagtcctgaggcagctggtcaccccgcaaagcaaagttcccgac
ggccgcttcccagacctgagtgcagagctcacaaggtgggacacggcctttgatcacaaa
caggctcggaagacaggagtgattaccccaaaggcaggttttgacgctgattatgacgga
gcactacgggatatcagaaccatccaggaagatcttcggaagtacctggataagcagcgc
aagctgcttgggctcaaatccgtgcagtactgggggacaggcaagaaccgataccagctg
gaaatcccagaaagcgccgtatctcgtaacctgccgagggagtacgagctgaggtcgagc
aggaagggctacaagcgctactggaccaaggagattgagaagatgctggctgcgatggtg
aatgccgaggagcgccgcgatgctgccctcaaggactgcatgaggcgcctcttctacaac
tttgacaagaacagcaaaggactggcagacagctgtgtggagtgcattgctgtgcttgat
gtcttgatgtcccttgctcactacagtcaaggtggtgatggacccctgtgccgacccgta
atcctgctgcctacggataatgctgctcccttcctggaacttagaaattcccgccatccg
tgcatcacaaaaactttctttggggatgattttattcccaacgacattgtgataggcatc
aaggacgaaggcagcagcagtgaggcctcctgtgtgttggtaactggcccaaacatgggt
ggcaaatctacgctcatgagacaggctggtctcctggcggtcatggcccagctggggtgc
tacgtgcccgcggaagcctgcaggctcacgcccatcgaccgcgtgttcacacggctcggc
gcctccgacaggatcatggccggtgaaagtaccttctttgttgaattgagcgagacttcc
agcattctgcagcatgcaacagagcactcccttgttctcgtggatgaactgggcagaggc
acggccacgtttgacggaacagccatagcgagcgcggtggtgaaggagctggccgagagg
atccggtgccggacgctgttctccactcactaccactccctggtggaggactattcccac
agcggggctgtgcgcctgggccacatggcgtgcatggttgaaaatgagagcgaagaagat
ccaagccacgaaacaattacgttcctgtacaagttcattgaaggagcctgcccaaagagc
tatggcttcaatgcggcaagacttgcagatattccagaggaagtaattcagaaggggcac
agaaaagccaaagtgtttgaaaaaaccaccctctccctgagaatatttaggtag
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