Hirundo rustica (Barn swallow): 120751055
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Entry
120751055 CDS
T09369
Symbol
CDC40
Name
(RefSeq) pre-mRNA-processing factor 17
KO
K12816
pre-mRNA-processing factor 17
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120751055 (CDC40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrt03041
]
120751055 (CDC40)
Spliceosome [BR:
hrt03041
]
Complex C
Other components
Step II factors
120751055 (CDC40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_RFWD3
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
120751055
NCBI-ProteinID:
XP_039916299
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All DBs
Position
3:complement(70040206..70078464)
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AA seq
581 aa
AA seq
DB search
MSAAIAALASYGGSDSEPDSEPETEGGSQRSAAVLASRDAVLHLRPPPAAPPALPVDAAP
EVAVKEDVETGVHLDPAIKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPA
HINDFMFEQQRRTFATYGYALDPSVDNPEAATKYIGSVEEAEKNQGLTVFETGQKKIEKR
KKFKENDASNIDGFLGPWAKYVDEKEVAKPSEEEQKELDEITAKRQKRGKLEDDKPGEEK
TILHVKEMYDYQGRSYLHVPQDVGVNLRSTVPPEKCYLPKKQIHVWSGHTKGVSAVRLFP
LSGHILLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNNAGTQFLSAAYDRYLKL
WDTETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHL
GAVNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLAC
QSMDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDADGKLNIWDWK
TTKLYSRLKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcggcgatcgccgcgctcgcttcctacggcgggtccgactcggagcccgactcg
gaacccgagaccgaaggcggctcccagcgctccgccgccgtgctcgccagccgcgatgcc
gtgctgcacctccggccgccgcccgccgcgcccccggccctgcccgtcgatgcggccccg
gaagtagccgtgaaggaagatgtggaaacaggagtccaccttgatcctgctatcaaggaa
gttcagtacaatcccacttatgaaacgatgtttgcacctgagtttggaccagaaaaccca
tttaggactcagcaaatggctgcacctagaaacatgctttctggatatgcagaaccagct
cacatcaatgatttcatgtttgaacaacaaagacgaacatttgcaacctatggttatgca
ttagatccctctgtagataaccctgaagctgctaccaaatatattggttctgtggaagaa
gctgaaaaaaatcaaggtttaacagtgtttgaaacaggacaaaagaaaattgaaaaaagg
aagaaattcaaggagaatgatgcatctaatattgatggtttcctgggaccatgggcaaaa
tatgttgatgaaaaagaagtagccaaaccttcagaagaagagcagaaggagttggatgaa
ataacagctaagaggcagaagagaggaaaactagaagatgataaacctggagaggagaag
actatattacatgttaaagaaatgtatgactatcaggggagatcttatcttcatgtccct
caagatgttggagttaatctccgttctacagtaccgcctgagaagtgctatcttccaaaa
aaacaaatccatgtgtggtccgggcatacaaagggtgtcagtgcagtcagattgtttcct
ctgtctgggcatatactgttgtcttgctctatggattgcaaaattaagctatgggaagta
tatggtgatcgaagatgtctacgaacatttattggacacagtaaagctgttcgagacatc
tgttttaacaatgcaggcactcagttccttagtgctgcatatgaccgctatctaaaactc
tgggacactgagacagggcaatgtatttcaagattcaccaacaggaaggttccttattgt
gtcaagttcaatcctgatgaagataaacaaaatctctttgttgcagggatgtcagataag
aaaattgtacagtgggatattcgaagtggtgagattgtgcaggaatacgataggcatttg
ggagctgtcaacaccattgtgtttgtggatgaaaatagaaggtttgtgagtacatctgat
gacaagagtttaagagtctgggaatgggacattcctgtagacttcaagtacatagctgag
ccaagtatgcattccatgccagccgtgactttgtctccaaatgggaaatggttggcttgc
cagtcaatggataaccaaatcttgatttttggagctcagaacagattcagattaaacaaa
aagaaaattttcaaaggtcacatggtagctggctatgcttgtcaagtggatttttcacct
gatatgagctatgtgatatctggagatgcagatgggaaactaaacatctgggactggaag
accacaaaactctacagcaggttaaaagcgcatgacaaagtgtgtatcggtgcagtgtgg
catccacacgaaacatccaaagtcattacgtgcggctgggatggtctgattaaactatgg
gactaa
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