Hirundo rustica (Barn swallow): 120751730
Help
Entry
120751730 CDS
T09369
Symbol
CNTN1
Name
(RefSeq) contactin-1
KO
K06759
contactin 1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120751730 (CNTN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hrt04515
]
120751730 (CNTN1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
hrt00537
]
120751730 (CNTN1)
Cell adhesion molecules [BR:
hrt04515
]
Immunoglobulin superfamily
Contactins
120751730 (CNTN1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
hrt00537
]
Others
120751730 (CNTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
fn3
Ig_2
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Interfer-bind
Tissue_fac
DUF4998
Fn3-I_PB4
NDNF
Big_3_4
Motif
Other DBs
NCBI-GeneID:
120751730
NCBI-ProteinID:
XP_039917953
LinkDB
All DBs
Position
4:28779283..28996692
Genome browser
AA seq
1023 aa
AA seq
DB search
MMVLKCTIPFEMMAEQKITIWFFIYHLITPCFVYSLAEEGNKGYGPVFEEQPIDTIYPEE
SSDGQVSMNCRARAVPFPTYRWKLNNWDIDLTKERYSMVGGRLVINNPEKSRDAGKYVCV
VSNIFGTVRSSEATLSFGYLDPFPPEERYEVKVREGVGAVLLCEPPYHYPDDLSYRWLLN
EFPVFIALDKRRFVSQTNGNLYIANVEASDRGNYSCFVSSPSITKSVFSKFIPLIPQSDR
AKVYPADIKVKFKDTYALLGQNVTLECFALGNPVPELRWSKYLEPLPASAEISMSGAVLK
IFNIQYEDEGLYECEAENYKGKDKHQARVYVQAAPEWVEHINDTERDIGSDLYWPCVATG
KPVPTIRWLKNGASFRKGELRMQSLTFDDAGMYQCIAENMHGIIYANAELKIVASPPTFE
LNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTELLVNGSRIRIWDDGSLEIINVTK
LDEGRYTCFAENNRGKANSTGVLEMTEATRITLAPLNVDVTVGENATMQCIASHDPTLDL
TFIWSLNGFVIDFEKEHEHYERNVMIKSNGELLIKNVQLRHAGRYMCTAQTIVDNSSASA
DLVVRGPPGPPGGIRVEEIRDTAVALTWSRGTDNHSPISKYTIQSKTFLSEEWKDAKTDP
SDIEGNMESATVIDLIPWMEYEFRIIATNTLGTGEPSMPSQRIRTEGAPPNVAPSDVGGG
GGSNRELTITWMPLSREYHYGNNFGYIVAFKPFGEKEWRRVTVTNPEIGRYVHKDESMPP
STQYQVKVKAFNNKGDGPFSLTAVIYSAQDAPTEIPTDVSVKVLSSSEMSVSWHHVSDKS
VEGYQIRYWAAHDKEAAAQRVQVSNQEYSTKLENLKPNTRYHVDVSAFNSAGYGPPSSTI
DVVTRKAPPSQRPRIISSVRSGSRYIITWDHVKAMSNESAVEGYKVLYRPDGQHEGKLFS
TGKHTIEVPVPSDGEYVVEVRAHSEGGDGEVAQIKISGATVGVPTLLLVLVVPALGVLAC
SGF
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgatggtattgaagtgcacaattccttttgagatgatggctgaacagaagataaccatt
tggtttttcatctatcatcttattacaccctgctttgtctactccctggcagaggaagga
aacaaaggttatggacctgtttttgaggagcagcctattgataccatctatccagaagaa
tcttcagatggacaagtttcaatgaactgcagagctcgagcagttccttttcctacttac
aggtggaaactcaacaactgggatattgatttaacaaaggagcgctacagtatggtggga
ggcagacttgttatcaataatccagagaaatcaagggatgctggaaaatatgtctgtgta
gtgtcaaatatctttggaactgtcagaagcagtgaagccactctgagttttggatatctg
gatccctttccacctgaggaacgttacgaggttaaagtgcgagaaggtgttggagcagtg
cttctttgtgagcccccttaccactacccagatgacctcagttatcgctggcttctaaat
gagttcccagtgttcattgctttggacaaacgacgatttgtgtcacagacaaatggcaat
ctctacattgcaaacgtggaagcatcagataggggcaattattcatgttttgtgtccagc
ccttcgataacaaagagtgtattcagtaaatttattccacttattccacaatctgatcga
gcaaaagtatatcctgctgacatcaaggtgaagttcaaggacacgtacgctctcctgggg
caaaatgtgacactggagtgttttgctcttggaaatccggttcctgaactcagatggagt
aaataccttgaacccttgccagcctctgctgagataagcatgtctggtgcagttcttaag
atcttcaatattcagtatgaagatgaaggactttatgagtgtgaagctgaaaactataaa
ggaaaagataaacatcaagcaagagtttatgtacaagctgctcctgagtgggtagaacat
atcaatgacacagaaagggacataggcagtgacctgtactggccttgtgtagctacggga
aagcctgttccaacaattaggtggctgaagaatggtgcctcgttccggaaaggtgaacta
agaatgcaaagtctgacctttgacgatgccggcatgtaccagtgtatagcagaaaacatg
catggaattatttatgcaaatgctgaactgaagattgtggcttcacctcctacttttgaa
ctgaaccctatgaagaagaaaatcctagcagctaaaggggggcgtgtaatcattgaatgc
aagcctaaagctgctcctaagccaaaattctcctggagcaaaggaacagaattgcttgta
aatgggagccgcatacgtatctgggatgatgggagcctggaaattatcaatgtcacaaag
ctggatgaaggtcgctacacctgtttcgcagaaaataaccgaggaaaagccaatagcact
ggtgttctagaaatgacagaagctacaaggattactttagctccgttgaatgttgatgtc
accgttggagagaatgctaccatgcaatgcattgcatcccatgatcccacattagacctg
acatttatttggtctctaaatggctttgtaatagattttgagaaagaacacgaacattat
gaacggaatgttatgattaaatccaatggtgagctgctgattaaaaatgttcagctgcgg
catgcagggaggtacatgtgcactgctcagacaatcgtggacaactcctcagcttcagct
gaccttgtggtaagaggtcctccgggcccccctggaggtataagagtggaagaaattaga
gacactgctgtagcacttacctggagtcgcggaacagacaatcacagtcctatttctaaa
tacactatccagtcaaaaacctttctatctgaagagtggaaagatgccaaaacagaccca
tcagatattgaaggaaatatggaatcagctacagtgatcgatttaattccatggatggaa
tatgaattccggataatagcaacaaacactttggggacaggagaacccagcatgccgtca
cagaggattagaactgaaggcgctcctcccaatgtggctccttctgatgttggaggaggg
ggtggaagcaatcgagagctgacaataacatggatgcctttgtcaagagaataccactat
ggcaataacttcggttatatagtggccttcaaaccatttggtgagaaagaatggagaaga
gttacagttactaatcctgaaattggccgatacgtccacaaggatgaatcaatgccacct
tcaactcaatatcaagtaaaagtgaaagcttttaacaacaaaggggatgggccattcagt
ctcactgctgtcatttattcagcacaagatgctccaactgaaatacctacagatgtgagt
gtaaaagttttgtcatcttctgaaatgtctgtttcttggcaccatgtttctgataaatct
gtggaaggctatcagattcgttactgggctgctcatgataaagaagcagctgcacagcgg
gtacaggtgagcaatcaagagtattcaaccaaactggaaaacctgaagcctaacactcgc
taccatgtagatgtgtctgccttcaatagtgcaggctatggacctcccagcagcaccatt
gatgttgttaccaggaaagcacctccaagccaacgtccaagaattatcagttctgtgaga
tctggttcaaggtacatcatcacctgggatcacgtgaaggcaatgtcaaatgagtctgct
gttgaaggatacaaagtactgtataggccagatggacagcatgaaggcaagttgttttcc
actggaaagcacacgatagaggtcccggtccccagcgatggtgaatatgttgttgaggtg
agagcacacagtgaaggaggagatggagaagtagcccaaataaaaatttcaggtgccact
gttggagtaccaactctgcttctggtccttgtggtgcctgccctgggtgtccttgcctgc
tcgggattctga
DBGET
integrated database retrieval system
