Hirundo rustica (Barn swallow): 120751774
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Entry
120751774 CDS
T09369
Symbol
PDZRN4
Name
(RefSeq) PDZ domain-containing RING finger protein 4 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hrt04121
]
120751774 (PDZRN4)
Enzymes [BR:
hrt01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120751774 (PDZRN4)
Ubiquitin system [BR:
hrt04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
120751774 (PDZRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4
zf-RING_2
zf-C3HC4_4
zf-RING_5
zf-C3HC4_3
zf-rbx1
PDZ_Tricorn
TRAF3_RING
Prok-RING_4
IBR_1
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
120751774
NCBI-ProteinID:
XP_039918054
LinkDB
All DBs
Position
4:29043579..29280342
Genome browser
AA seq
1032 aa
AA seq
DB search
MGFDPSRFAGPVAAELRCGLCGRVLEEPLSTPCGHVFCAGCLLPWAARRRRCPLRCRPLA
AAELRPVLPLRSLVQKLEVKCDYSPRGCGRTVRLRELPAHLAACRYGPPGPAEPQPRAGH
PSGRSPGSSAGRPLAGGGHRCLRALRGGGAPEPGHELKREAPRWSGREKSLLAQLSALQS
EVQLTARRYQAKFGQYMSHISSIARDLAGSQPGKGGERKPLMIMLHRENDTLGFNIIGGR
PNQNNREESAEGIYVSKILENGPADKAEGLQIHDKIIEVNGKDLSKATHEEAVEAFRNAK
EPIVVQVLRRAPATKTHSSSQDVRLMDASTQTDITFEHIMALAKLRPSTPPVPDICPFLL
SDSCHSLHPVEHEFYEGNEYLSSLPADPDRAEDFEYEEVELCRVGSQEKLGLTVCYRTDD
EEDTGIYVSEVDPNSIAARDGRIREGDRILQINGQDVQNREEAVALLSSEECRKIVLLVA
RPEMQLEEGWLDDERNEFLEELNLEMLEEQHNEAMQYTANEVEQPKKHEEEDGTTDTATS
SSNNHEKDSGVGPTDESLRNDESSEQENATEEQNSATLQSKRDLGHSQDTLGSVELQCNE
SFVSGEYIESDFIGNPEEECERFRQLLELKCKIRNHGEYDLYYSSSMIECNRREQDGVEH
ELQLLNEELRNIELECQNIMQAHRLQKVRDQYGDIWALHDESFRNYNTSTDIQRSKLDDI
MEHPEKSDKDSSSAYNTAESCRSTPLTVERSPDNSLQRVISITNRKNLRTTIVANQSSSG
QSNRETTSAKTKPTEQNSAAENTVLASESSKFTDQERQGSEHIPYLSPYHSSSYRYGNIP
AHAKHYQSYMQLIQQKSAVEYAQSQLSLVSMCKDSQKCAEPKMEWKVKIRSDGTRYITKR
PVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMM
RSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGT
RVHNAFLSVTTV
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atgggcttcgacccgtcgcggttcgcggggccggtggcggcggagctgcggtgcgggctg
tgcgggcgggtgctggaggagccgctgtccactccgtgcgggcacgtcttctgcgccggc
tgcttgctgccctgggcggcgcggcgccgccgctgcccgctgcgctgccggccgctggct
gccgccgagctgcgccccgtcctgcccctccgcagcctcgtccagaagctggaggtcaag
tgcgactacagcccgcggggctgcggccgcaccgtgcggctgcgggagctgcccgcccac
ctcgcggcgtgccgctacggcccgcccggccccgccgagccgcagccccgggccgggcac
ccctccggccgctcgccgggcagctcggcggggcggccgctggcgggcggcgggcaccgc
tgcttgcgggcgctgcggggcggcggcgccccggagccgggtcacgagctgaagagggag
gccccgcgctggagcgggagggagaagtcgctgctggcgcagctgtcggcgctgcagagc
gaggtgcagctgacggcgcggcggtaccaggcgaagttcggccagtacatgagccacatc
agcagcatcgcccgggacctggcgggcagccagcccggcaagggaggagaacgcaaacca
ttaatgatcatgctacaccgagaaaatgatactttgggattcaatatcataggaggacga
cccaatcagaacaatcgggaggaatctgctgagggaatttatgtgtcaaagattttggaa
aatggacctgcagacaaagcagaaggcctgcaaattcatgacaagattattgaggtcaat
gggaaggacctctccaaggccactcatgaagaagcagtggaagctttccgcaatgccaag
gagcccattgtagttcaggttttacgacgagccccagctaccaaaactcacagtagctct
caggatgttcggcttatggatgccagcactcagactgacatcacttttgagcatattatg
gctctggccaagctaaggccttccacaccaccagttcctgatatctgcccttttctactt
tcagacagctgccattctcttcacccagtggagcatgaattttatgaaggtaatgagtat
ctttccagcctgcctgctgacccagatagagcagaggactttgagtatgaggaggtggag
ctgtgccgagttggcagccaggagaagctggggctgactgtctgctacagaaccgatgat
gaggaggacacgggaatctatgtcagtgaggttgatccaaacagcattgctgccagagat
ggacggatccgtgaaggagaccgcattttgcaaataaatggccaagatgtccagaacagg
gaagaggcagtggcgttgctctccagcgaagaatgcaggaaaattgtgttgctggtcgcg
aggccagagatgcagctggaggaagggtggctggatgatgaaaggaatgaattcttagag
gagttaaacttggaaatgctggaagagcagcataatgaagcgatgcagtacacagccaat
gaggtggagcagccaaagaaacatgaagaggaagatggcactactgacactgcaacctca
tcatccaacaatcatgagaaggacagtggggtgggacctacagatgaaagtctccgaaat
gatgagagctcagagcaagaaaatgcaaccgaggagcagaacagtgctaccctccagagc
aaacgggatctgggccacagccaggatacattaggcagtgttgagctccagtgcaatgaa
agctttgtgtctggggaatacattgaatctgatttcataggaaatccagaggaggaatgt
gaaaggtttcggcagctgttggaactgaagtgcaagattcgaaaccatggggagtatgat
ctttattactcaagcagcatgatagaatgcaacagaagagagcaagatggagtggagcat
gagctgcagctacttaatgaagaactgaggaacattgagcttgaatgccagaatattatg
caagctcaccggctccaaaaggtgagagatcagtatggagacatttgggctttacatgat
gaaagtttcaggaattataacaccagcacagacatacagagaagcaaactggatgacatc
atggagcaccctgagaagtctgacaaggacagctccagtgcctacaatactgccgaaagc
tgcaggagcactccactgactgtggagcgatcccctgataactccctccagagggtgatc
agcataaccaacaggaaaaacctgaggaccacaattgttgctaatcagtcatcctcagga
caaagcaacagggagacaacctcagctaaaaccaaacccactgagcaaaacagtgctgca
gagaacacagtactggcatcagaaagcagcaaattcacagaccaggaaaggcaaggcagc
gagcacattccctatttgtctccatatcacagttcttcttacaggtacgggaacatacct
gctcatgcaaagcattatcaaagctatatgcaactgatccagcagaagtctgctgtggag
tatgcccaaagccagctcagtctggtgagcatgtgcaaagactcgcagaagtgtgcggag
cccaagatggaatggaaagtgaaaataaggagcgatgggacgaggtacatcacaaagaga
ccagttcgagaccggatcctgaaggaacgtgccttaaaaattaaggaggagcgcagtggg
atgacgacagatgatgatacaatgagtgagatgaagatgggtcgctactggagcaaagaa
gagcggaagcaacatttggtgcgcgctaaggaacagaggaggcggcgggagttcatgatg
aggagcaggctggagtgtcttaaggagagtccacagagtggcagcgagggcaaaaaagaa
atcaacattattgaactgagtcacaaaaagatgatgaaaaagagaaacaagaaaatcttg
gacaactggatgacaatacaagaactgatgacacatggtgctaaatccccagacggcaca
agagtgcacaatgcctttttatcagttactactgtatga
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integrated database retrieval system
