Hirundo rustica (Barn swallow): 120751807
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Entry
120751807 CDS
T09369
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03013
Nucleocytoplasmic transport
hrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120751807 (UPF2)
03015 mRNA surveillance pathway
120751807 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120751807 (UPF2)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120751807 (UPF2)
mRNA cycle factors
P-body specific factors
120751807 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
120751807
NCBI-ProteinID:
XP_039918138
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All DBs
Position
4:complement(5707437..5760625)
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AA seq
1271 aa
AA seq
DB search
MPAERKKPANMEEKEPQLNNKEKEFSERRPVSTREKPKEDVKVGMKRETLKVPEDKKKKM
EEDKRKKEDKERKKKEEDKVKAEEEQKKKEEEEKKKLEEEEKKKQEEEEKKKQEEEAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPESRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QAWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKTVAEKFNLSFPSSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQEKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKYSQSKDSSKDESRDSKDAKDNKEAAGNEDLELELENLDINDDALELDCGDEAE
DLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKANR
RKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHVRKKDQINIE
TKNKTVRFIGELTKFKMFSKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPESH
LRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYIRKLLYK
DLSKVTTEKVLRQMRKLPWQDAEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDV
GIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFISFGV
NSDGSPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLDV
WTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEEAVRQVQDLEREFLIKLGIVNDKDSKD
SIAEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNEEEEGEEEEEENTDYLTD
SNKENETDEENTEVMIKGGGLKHVPCAEDEDFIQALDKMMLENLQQRSGESVKVHQLDVA
IPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWNQ
QQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPNA
DLIFKTGGRRR
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagccagcaaatatggaagaaaaagaacctcagttaaataat
aaagaaaaagaatttagtgaaaggcgaccagtgagcaccagggagaagccaaaagaagat
gtgaaggttggcatgaagagagagactttaaaggttcctgaagataaaaagaaaaaaatg
gaagaggataaaagaaagaaggaagacaaggagcggaagaaaaaagaagaggataaagtc
aaggcagaagaggagcaaaagaagaaagaagaagaagaaaaaaagaaacttgaagaagag
gaaaaaaagaaacaagaggaggaagagaaaaagaaacaagaagaagaagctgctcaactg
aaggagaaagaggaagcacatcagctccatcaggaggcttgggagcgccatcaggcaaga
aaagagctccgcagcaaaaaccagaacgcgccagagagtcgtccggaggaaaacttcttc
agcaggctggactccagtctgaagaagaacacggcttttgttaagaagctaaaaaccatt
acagagcaacaaagggactccttgtcccatgactttaatagcctgaatttaagcaaatac
attgcagaagcagtagcttctattgtggaggccaaactgaaaatatcagacgtgaactgc
gctgtgcacttgtgttccctcttccaccagcgatacgctgattttgctccttcgttactt
caggcttggaaaaaacattttgaagcgaggaaagaagagaagactcccaacattaccaag
ttaagaactgatttgcgtttcattgcagaattgacgatagttgggattttcactgacaag
gaaggtttgtctttaatctatgagcagcttaaaaacattattaacgccgatcgagaatcc
cacactcacgtttctgtggttatcagcttttgtcggcactgtggagatgacattgctggt
ttggtaccgaggaaagtaaaaactgttgcagagaagtttaacttgagctttccttctagt
gagataattagcccagagaaacaacagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagggagctacaaaatattgaaagacaaaac
agacgcattctccactccaaaggggagttgagtgaagatcgacacaagcaatatgaggaa
tttgcaatgtcgtatcagaagctgttggcaaattcccagtctctggctgatcttttggat
gagaacatgcctgatctcccccaagagaaacctactcccgaggaacatggacctggtatt
gatattttcacaccaggaaagcctggagaatatgacctggaggggggtatctgggaagat
gaagatgccagaaacttctatgagaatctcattgacttgaaggcttttgtgccagcaatt
ttgtttaaagataatgaaaaatattcccagagcaaggattccagcaaagatgaatcaaga
gattcaaaagatgccaaagataataaggaagcagctgggaatgaggatctggaattggag
ctggagaacctggatattaatgatgatgcactggagttggactgtggagatgaggcagaa
gatcttacaaagaagcttcttgatgagcaagaacaagaagatgaagaagccagtactgga
tctcatttaaaactcatagtagatgcttttcttcagcagcttccaaattgtgtcaacaga
gacctcatagacaaggcagcaatggatttctgcatgaatatgaatacaaaagctaacagg
agaaaactggtacgagcacttttcatagttcctagacaaagattggatttgctaccattt
tatgcaagactggttgccacattgcatccctgtatgtctgatgtagcagaggatctctgt
tccatgctgaaaggggatttcaggttccatgtaagaaaaaaggaccagatcaacattgaa
acaaagaataaaactgtgagatttattggtgagcttaccaagtttaagatgttctccaaa
aatgacactctccactgtttaaagatgcttctgtcagacttctctcatcaccatattgaa
atggcgtgtaccttgctggaaacctgtggcagattcctcttcagatcgccagaatctcac
ttaagaaccagcgttcttttggaacaaatgatgaggaaaaaacaagcaatgcatcttgat
gcacgctatgttacaatggtagaaaatgcctattactactgtaatccccctccagctgaa
aaaactgtgaagaaaaaacgtcctcctttgcaagaatatatccgtaagcttctttacaag
gatctctccaaggtcaccacagagaaggtgctgagacagatgcgcaagctgccttggcag
gatgcagaagttaaggactatgttatatgctgtatgatcaacatctggaatgtgaaatat
aatagtattcactgtgtagccaacctcttagcagggttggtcctttaccaggaagacgtt
ggaattcatgttgtggatggagtgctagaggatattcgactaggaatggaggttaatcaa
ccaaagttcaaccaacggcggatcagcagtgccaagtttttgggggagctttacaattat
cgaatggtggagtcagctgtaatatttagaactctgtattccttcatctcctttggtgtg
aactctgatggcagtcctagtccactggaccctccagaacatcttttcaggatcagactt
gtctgtactatccttgatacctgtgggcagtattttgacagaggatccagcaagcgaaaa
cttgattgcttccttgtatattttcagcgctatgtgtggtggaagaaaagtctggatgtt
tggacaaaagaccacccttttcctatagacatagactacatgatcagtgatacactggaa
ctgctgagaccaaagataaagctctgcaattctctggaagaagctgtcagacaggtgcaa
gacttggaacgagaattcttaataaaattgggaattgtgaatgacaaagactccaaggat
tccattgcggaaggagagaatctggaagaggatgaagaagaggaagaaggtggagcagag
acagaggaacaatctggaaatgaaagtgaagtaaatgagccagaagaagaggagggctct
gacaatgaggaagaagagggtgaagaagaggaggaagaaaacaccgattacctaacagac
tcaaataaggaaaatgaaaccgatgaggagaatacagaagtaatgattaaaggaggagga
ctgaagcatgtcccttgtgcagaggatgaggacttcattcaggccttggataaaatgatg
ctggaaaatcttcagcaacggagtggtgaatctgttaaagtgcatcagctggatgttgct
attcctctgcatctcaaaagtcagctgaagaagggccccccacttggaggtggggaagga
gagtcagagtccggggacacgatgccatttgtcatgttaacacgaaaaggcaacaaacag
cagtttaagatcctaaatgtaccgatgtcctcccaacttgctgcaaaccattggaaccaa
cagcaagcagaacaggaggagagaatgaggatgaaaaagctcacgttggatatcaatgaa
cggcaggaacaagaggattatcaggaaatgttgcagtctctggcgcagcgtccagctcca
gcaaatactaatcgtgagcggcggcctcggtaccagcatccgaagggagcacctaatgca
gatctaatctttaaaaccggtgggaggagacgttga
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