Hirundo rustica (Barn swallow): 120751967
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Entry
120751967 CDS
T09369
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog isoform X1
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hrt03016
]
120751967 (RTCB)
Enzymes [BR:
hrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
120751967 (RTCB)
Transfer RNA biogenesis [BR:
hrt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120751967 (RTCB)
Prokaryotic type
tRNA splicing ligases
120751967 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
120751967
NCBI-ProteinID:
XP_039918464
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All DBs
Position
4:55772685..55783408
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagattgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcgtgtggagggcgtcttctacgtgaacgac
ccgctggagaagctgatgttcgaggagctgcgcaatgcctgccgaggcggaggtgcgggt
ggcttcttgcctgctatgaaacagattgggaatgtagctgcattgcctggaattgttcat
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcttttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtcggctttgacatc
aactgtggtgtccgcttgctgcggacaaatttggatgaaagtgacgtgcagcctgtgaaa
gagcagctggcccaggccatgtttgaccacattcctgttggtgtcggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactggagatgggtgtggactggtctctc
cgagagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaagaatgcta
caggccgaccccaacaaagtctcttcaagggcaaagaaaagggggctgcctcagctgggg
accctgggagccggaaatcattatgctgagatccaggtggtggatgagatttacaacgag
tatgctgccaagaaaatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagagggctgggccaccaggttgccacagatgcactggtggctatggaaaaagcc
atgaaacgggacaaaatcatagtgaatgatcgccagttggcgtgtgccaggattgcctct
gcagagggacaggattacttgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacgacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgacatgcacgttatctatgacgtgtctcacaacattgccaaagtggagcag
catgtagtagatggaaaggagcggaccctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttattgctgttgattatcaactgactggacagcccgttttg
attggtggcacaatgggcacctgtagctatgtcctcactggaacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcgg
cgtaacttggacttccaggatgtactggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgat
gtagttaacacttgccacgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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