Hirundo rustica (Barn swallow): 120752008
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Entry
120752008 CDS
T09369
Symbol
SPAM1
Name
(RefSeq) hyaluronidase PH-20
KO
K01197
hyaluronoglucosaminidase [EC:
3.2.1.35
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt00531
Glycosaminoglycan degradation
hrt01100
Metabolic pathways
hrt04142
Lysosome
Module
hrt_M00076
Dermatan sulfate degradation
hrt_M00077
Chondroitin sulfate degradation
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00531 Glycosaminoglycan degradation
120752008 (SPAM1)
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120752008 (SPAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02042 Bacterial toxins [BR:
hrt02042
]
120752008 (SPAM1)
00536 Glycosaminoglycan binding proteins [BR:
hrt00536
]
120752008 (SPAM1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
hrt00537
]
120752008 (SPAM1)
Enzymes [BR:
hrt01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.35 hyaluronoglucosaminidase
120752008 (SPAM1)
Bacterial toxins [BR:
hrt02042
]
Toxins that damage the extracellular matrix
Hyaluronidases/Collagenases
120752008 (SPAM1)
Glycosaminoglycan binding proteins [BR:
hrt00536
]
Heparan sulfate / Heparin
Enzymes
120752008 (SPAM1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
hrt00537
]
Enzymes
120752008 (SPAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_56
Motif
Other DBs
NCBI-GeneID:
120752008
NCBI-ProteinID:
XP_039918542
LinkDB
All DBs
Position
4:complement(21645499..21650699)
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AA seq
587 aa
AA seq
DB search
METVRQMQSFGICVTCTYPVASGVVFATLLVSCCSSLNIRARPLVSNLPFLSIWNAPTEL
CTERTGVQLDMNFFPLIGSTLKTSIGQNITLFYPDRLGYYPYKNEVTGEAFNGGLPQLSL
LENHLKKAKEDIQFYIPSDEQLGLAVIDWENWRPVWIRNWGSKDIYRQESIELVQQRDLS
LSEGEARAIAKMEFEFAAKSFMLETLKLGIEMKPNRLWGYYLYPDCYNYDYKQNPHNYTG
TCLDIEIERNNELNWLWEKSTALYPSVYLETALKSSRNAQLFVRNRVQEAIRTSYVSNSS
HPLPVFVYTRPVFTDVYEEYLSEDDLVNTIGESAALGASGIVIWGDMNLTQNKNTCRTLD
NYLRRTLTPYLINVTMAARICSQVLCQDSGACARKKWNSNDYLHLNPENIAIQMTKDGKY
TLQGQPSYQDLQAFIEKFDCLCYAGHSCEPRADINDIHYLQACISEDICIQISSNSLSNV
EASEEKILPNRSAFSFISESKGTLSTHPETEYFQSTFGNNILNITTAEYNTVTAASSYDL
EENDTRTFSSSSSYKIRMFNLFHLVLLLRTLIQMAHESENILFPDYI
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggaaactgtaagacaaatgcaaagttttggcatctgtgttacctgtacatatcctgta
gcatctggtgtggtgtttgccactcttctagtttcttgctgctcatctctgaacataaga
gctcgtccacttgtttctaatttacccttcctttctatctggaatgctcctacagaactt
tgtactgaaaggactggagtgcagctggacatgaatttttttcctctaattggaagcaca
ctaaagacatccattgggcaaaacatcactctcttctatccagacaggcttggctactac
ccttacaaaaatgaagtcacaggagaggcattcaatggaggacttcctcaactctcactg
ctggagaatcatttaaaaaaagccaaagaggacatccaattctacattccttctgatgaa
cagcttggattggctgtcattgactgggaaaactggagacctgtgtggataaggaactgg
ggatcaaaagacatttacagacaggaatccattgagctagttcagcagagagacctcagt
ctatcagaaggtgaagccagagctatagctaaaatggaatttgaatttgcagcaaaatca
tttatgttggaaactttgaagctgggcatagaaatgaaaccaaatcgtctgtgggggtat
tacctttatccagactgttataactatgattacaaacaaaacccacacaattatacagga
acctgtttagatattgaaatagaaagaaataatgaacttaactggttatgggagaaaagc
acagcactttatccatctgtctatctagagacagccttaaaatcctccagaaatgctcaa
ctctttgttcgcaacagagttcaagaagccattagaacttcctatgtctctaactctagt
catccccttccagtttttgtatacacacgtccagtattcacagatgtctatgaggaatat
ctctctgaggatgacctggtaaataccatcggagaatctgctgcactgggtgcttctgga
attgtgatctggggtgatatgaatttaacacaaaacaagaacacctgtagaactctggac
aactaccttaggaggactttgactccgtacctcatcaacgtcacaatggcagccagaata
tgtagccaagtactatgccaagactctggtgcttgtgcacggaaaaaatggaattccaat
gactatcttcacttgaaccctgagaatattgcaattcaaatgacaaaggatggaaaatat
actttacaagggcaaccatcatatcaggatctgcaagcattcatagaaaaatttgattgc
ctttgttatgcagggcatagctgtgaacctagagctgatataaatgacatccattacctc
caggcttgcatttcagaagatatttgcattcagatctcctcaaattcactttcaaacgta
gaagcctctgaagaaaagatcctgcctaacagaagtgcattttcatttatctctgagagt
aaggggacattatctacacatcctgaaacagaatatttccaatctacctttggaaataat
atacttaatataacaactgcagaatataacactgttacagctgccagtagctatgattta
gaagaaaatgatactcgtactttcagtagttcttcatcctataagataaggatgtttaat
ttatttcacttagttctacttttgagaaccttaatacaaatggcccatgaaagtgagaat
attcttttcccagactatatctga
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