Hirundo rustica (Barn swallow): 120752090
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Entry
120752090 CDS
T09369
Symbol
CFAP54
Name
(RefSeq) LOW QUALITY PROTEIN: cilia- and flagella-associated protein 54
KO
K25553
cilia- and flagella-associated protein 54
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
hrt03037
]
120752090 (CFAP54)
Cilium and associated proteins [BR:
hrt03037
]
Motile cilia and associated proteins
Sperm associated proteins
120752090 (CFAP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFAP54_N
fn3
Motif
Other DBs
NCBI-GeneID:
120752090
NCBI-ProteinID:
XP_039918683
LinkDB
All DBs
Position
4:complement(51552186..51682145)
Genome browser
AA seq
3236 aa
AA seq
DB search
MGDRRRAGMDESECKREDMENECRKLGTVPYAHRDDEHGKKPCSRHSDTISKRKAPSPVS
QAVEKPPQAVPPGLSRXGPEGRCPRPLPGDSDVRSRARPSMAEPAGPPYPAGPPGPHAAF
FGPVARGNPVVDSFEAELRRVLSSLRRLRGAKEAKPPQHDLHRQGANTLFNIWIKYKPRL
PEWYYNERLVEVGDTLAQIKEYKLALLQCYERYLQQFISVNLDDVMDDVHRFKSTFFPNG
VADNKAVLTFHALQARNVCIYQMVCSRDRNLMNQESLQTCLNVLTSLRLTMQVALPQESL
CWLIYNGTIHIYTICRHLMVMGQSAKVLEYILWASICMESSIPLLSVHYLTWRATLYTAV
SQCYFDCQAGIYGEMFARRGLIKIDELKQLEDTSSSLEHTEAEKIFREATLKMSIMIFKR
AVYESRRKSNSFQHESKVNPRKAVNLSWPRTTTERLLVEMFDGAAAQFLAILEALSDSSR
NLLPPHPPAPDEIEIRDVTSELFSAGLEILSGGESNGTNHFGMINPSSTLLQLMLTGEKG
VSGDAAVKFVKLAFSYEEWDVFYSALEFVDNFLQTQDDPTWKKAEIELKLLTLMQALAFP
GKFDRSFSFSDDNSKEASAPQGSERTQTIRKESLKPEDPFHDLKILATTVSSCVSTSEQN
VHPDKEILVDVVMCLWQKCKTELQQIRMSGSDCLEYIHTHQAYQWVHILWIMNEIIEKSN
IADTNVMFAEITLCLAAILENVADSTRQSKEKEGGSASLLQDETFDMPEILMKTPTEQLQ
IAYEILEKAINDMNTSRVMTLLPDGKSIFDNCCTKVDSNDQNLNSVLGCGDDKTRTDNGF
VIDLHLELIQAQHRVAVKLLKITQGARLVNRSLKSSRSHEKDIEDFQYLSEELIMKKIKR
NKLSRAIFLMQKAAQKFPEELTTASQRQLLEEALTLIEQVEAEQSALYRSLKEAMHSKKK
SRTPPPPLLLSRSHCSMTFKPAPFDSDIQVSWYCILGSVAEGSTTKVRINSNKLQNSGEQ
IPADGKILLEVQGLDANEKYVFAVAAYSSDGKLIGDAVGQMTKPILAYPPLSATTVRAYL
TQVAYQTGNFTLARAAFSPMWDYFVSDSPPLPPNAAVISTSNNLTISEKRLRFEAVSQIS
PITLYLFLRTVFAVSDINVMEGALYCDSICSNEIFYKEQVARLAECERMTVAIELSNWLN
DASYTLQSVVQCYGLLVPLIYHKIFLVPVVQILIKCLAVLQEIPSATLQGRQEGCYESIQ
HMIACTSYHIAKVLHSWKEYELAVIIINYGKNLLISPAALPGLSGDVKTKETYTGKENRS
SRACHLAAMAKAAENLSTLESSLLKLTEPGLGTQLTGKECPLVLYPVISCWTSEHAYQEV
LKFRGQTRFLEFFVQLLHKVLNEEKFQCVLEWADSVEVYLKRRNENFLGTDGISTQVRSL
NLGESTHAAGGQKGKDTSSSKKPKASPSKKPTKKAMPKKGPLREYLMKNPDAMNSPETQK
KGKNKLKKLAHQTLVMLLSKYVTRSQFCQMCLEEMPWKSQMNIYLAVAHYHLFKKNLEEQ
YNIEISGSQLLDSYNILDPEIFSLNNSGTVLAREVVEDNTGKPTPPLLEKSEVTETQTFT
NKSPKNRNKQSQTSRSRITKTHGEQDKFQLNTLLLKHFTSIFLHLKRAVVLAHRGGHWTL
LQNACRELWNYTQEFQLIANQSHSHTDAFPISWDFLWNTIWLPFYFASDMIIDMIIDLQE
SSSLKIVDPEGDFCIPSCLGGIVDENGGSNLHPQPPLDDVNVVDLRWICNLILKTIELLY
QMKKWEALVHIAVQFNIFTHERFTEQVSPLLVYAQRQLLERIQQFSGPDSHESPFTKCLS
DDAQKMSCRNYIGYKLQLPVARSAREGVFPGCFFNPETNNDFTDHNQAKALVCVPLDVND
TLKCFRETLEKSKYQSRALRHSRKLLSLFLAHTQENVGKAISSHISSSRKLKFNVADEVI
FLPTPCDLSQEKYNFSSMVESRPIPKSQLSVIISSYERTIGMLETRNQRDLKVQGLHELG
NLHFYAGNKRAAFKYWCQALDETLNIADAINTWQETIFPKDATDCFAVGRSTDMSQKFLS
QAGAWGCLHAAVLVAKIAQYITISQMKLRTKHCYFSAILFKTLFRASLPHPASDYDFVQY
ETNILIPGIDLFSDRYRADISTVVASLNFIMFELHCAKQNLIILPLFTLYQYIVSEICKD
PAKCIEGRILKIKVFTDIGFFTEAFHELSLLISGERIPWKIPAGYRYTEQMQALHKFDSS
KSLMTATNLQVLEDTFNWSLSLTVVPLCNPQIMNKLTLAKIHLIICLSATINNIPEKVEK
NVYSVDNSSLPEPNKTTTSNVKVDDDQNSRQQEQRERMVHLVDCKDELNMAMLKGILLSE
AEESLSYLVQDIQKKCDGDISWYSVEDLEALIEAKLELASISQQRHQGALSVALAFSAIR
LLQDAKVFSMDVAHFQEEKDERECLDSTTEGVDLPPGVTAQGHVNERLWLRCRAMLVTAL
MTQIRGVGDVKGNDVAERRSVIKEVILEAEAFGDIETQAEMMMQAAILDLQERHPVADIK
LLLQKIISLLQENTFISLPASLTLVKSMLLLADILPLQMVEDSEHNSSAVEPLNLLVLAH
ELTIKTIFDCGEPVEWQIDDSTLTCLVLPAKNVYLPHINLLAQVKMKIGHTLAEKVASTA
SRDHLQWLHALRHLESALNLCRASATKKLDMEAELLFQIGQVERQITETGNKNSSQAVGT
LLEAIKLSQQHDQKYELIRRSYLEIALSYLYFAKYDEDVSETNQSTSSGGLSSVEAMKSE
VYKVQAWIAIRAATQVSEAVLASQRLIGMKTVKEQTMKDEVQQKIPEFASMDLFSSYRDF
ISVADGYSVASETPEVSSTESKQIIEDSQNESEGTESLVTKASQKKDTITWVHMIQYHNH
LKRIYNTKLSGPGLLSARGGHLGLISDTGIVLRIAEMHSFLENNLFEYSMCCLENFPREL
HDVETPLSSATDSSEVSLDVSEITSEASHVRIASPVSVTAEDDERTESRAASASNKEINI
QWYIPSVAKPSNHTETKVLLLYAYNIIPVKTNDITIFSPSVFSGNLWIPLARIISLREKL
SDLKEQVETLMQGFSTLVPTRFEEQSETLKISPSIKPKTSDTKVHLDEKTEEIAKKCLFE
VKALLSVVPALSSPLTEIPFDVTLQSITNLEDMFDLVNGCIIPEGNLFDWIVSLLH
NT seq
9711 nt
NT seq
+upstream
nt +downstream
nt
atgggggacaggaggagagctgggatggatgaaagcgaatgcaagagagaagatatggaa
aatgaatgcaggaaattaggaactgtcccttatgctcatcgtgatgatgaacatggcaag
aaaccgtgcagcaggcacagcgacacaatcagtaagcgcaaagcgccatccccggtgagc
caggctgtggaaaagccgccccaggcggtacctcccggcttgtccaggngcggccctgaa
ggccgctgcccgcggccgttgcccggagacagcgacgtccgctcccgggccaggccgagc
atggcggagcccgccgggccgccgtaccccgccgggccgccgggcccgcacgccgctttc
ttcgggcccgtggcgcggggcaacccggtggtggacagcttcgaggccgagctgcggcgc
gtcctgagctccctgcggcggctgcgaggcgcgaaggaggccaagccgccgcagcacgac
ctgcaccgccaaggagcaaatactttgtttaacatttggatcaaatataagccacgacta
ccggagtggtattacaatgaaagacttgtggaagttggtgatacccttgctcagatcaaa
gaatataagctggcacttctacagtgctatgaaagataccttcagcagttcatttctgta
aaccttgatgatgtcatggatgatgtgcaccgctttaaatccaccttttttccaaatggt
gtcgcagacaacaaggcagtacttacgttccatgctttgcaagcgagaaatgtgtgcatt
tatcagatggtttgcagcagagacagaaatcttatgaatcaagagtccctgcagacttgt
ctcaatgtcttgacctcattacgactcactatgcaagtggctctacctcaggagagtttg
tgttggcttatctacaacggtactatccatatttacaccatatgcagacatttgatggtg
atgggccagtctgctaaggtcctggaatacatactgtgggccagtatatgtatggaatca
tccattccactcttatctgtgcattatttgacgtggagagccaccctatatacagcagtt
tctcagtgttattttgattgtcaagctggcatttatggagagatgtttgctcgccgtgga
ttgattaaaattgatgaactgaagcaattagaagataccagttcttctctggaacataca
gaggcagaaaagatttttagagaggccactctaaagatgtcaataatgattttcaagaga
gcagtatatgaatccagaagaaagtcaaacagctttcaacatgagtcaaaagttaacccg
agaaaagcagtaaatctgtcatggcctcgcaccactaccgagcggctgctggtggaaatg
tttgatggtgctgcagctcagttccttgccatcctggaagcactgtctgatagtagcagg
aatctattgccccctcatcctcctgctcctgatgaaatagaaattcgtgatgttacttct
gagcttttttctgcaggcctagaaatcctctcaggtggagagagcaatggcaccaatcat
tttggtatgattaatccatcatctactcttctgcagttgatgctaacaggagaaaaaggg
gtgtctggagatgctgctgtgaaatttgtaaaattagctttcagctatgaagagtgggac
gtattttattctgctcttgaatttgttgataattttcttcagactcaagatgacccaaca
tggaagaaagctgaaatagaactcaaacttcttacactgatgcaggctttagcattccca
ggaaaatttgaccgtagtttttcttttagtgatgataatagcaaagaagccagcgcacct
cagggttctgaaaggacacagacaattagaaaggaatcattaaaacctgaagatcctttt
catgatcttaagattttggcaacaacagtgtcttcctgtgtctccacatctgagcagaat
gtccatcctgacaaagaaatacttgttgatgtagtaatgtgtttgtggcagaagtgtaaa
acggaacttcagcaaatccgaatgagtggaagtgattgcttagaatatatccacacacat
caagcttatcaatgggttcatatactctggataatgaatgaaattattgagaagagcaac
atagcagacactaatgtaatgtttgcagagataaccttatgtctagctgcaatactggaa
aatgtagctgattctacaagacaatctaaggaaaaagagggaggaagtgcttctcttttg
caagacgaaacctttgatatgcctgaaatactgatgaaaacacctacagaacaattacaa
attgcttatgaaattcttgaaaaagcaattaatgacatgaacacatctcgggtaatgacc
cttttaccagatggaaagtcgatatttgacaactgctgtacaaaggtggactctaatgat
cagaatttgaattctgttttgggatgtggtgatgataaaacaagaacagataatggtttt
gtaatagatttacacttggagcttatccaggctcaacatcgagtagctgtaaaacttctt
aaaattacacaaggtgctcgacttgttaacagaagtcttaaatctagtaggtctcatgag
aaggatattgaagatttccaatatttatcagaggaacttataatgaaaaaaattaaaagg
aataagctatccagagcaatatttttgatgcaaaaggctgcacagaagtttcctgaagag
ttaactactgcttcccaaaggcagctactggaggaagcactaactttaattgagcaagtt
gaagctgaacaaagtgcgttgtatcgcagtctcaaagaagctatgcatagcaagaaaaaa
agcaggactcctcctcctcctctgttactttctagatcacattgctccatgacatttaaa
ccagccccatttgattcagatattcaggtttcatggtactgcattttgggctctgtagca
gaaggaagtactacaaaagtaaggataaatagcaataaacttcaaaattcaggagaacag
ataccggcggatgggaaaattctcttagaagtacaagggttagatgccaatgagaaatac
gtatttgctgtcgcagcatattcttcagatggaaaacttattggggatgccgttgggcaa
atgactaagccaatccttgcctatccacccctttctgctactactgttcgagcatatcta
actcaggtagcctatcagacgggcaactttacattagctagagcagcattttcaccaatg
tgggattactttgtttcagattctcctccacttcctcccaatgcagctgttatttctaca
agtaataatttgactatatctgaaaaaagattacgttttgaagctgtatctcagatttca
cctattacattgtacctctttttgaggactgtatttgctgtttctgacattaatgtcatg
gagggagcactctactgtgattccatctgttccaatgagatattttataaggaacaagtt
gctagattagcagaatgtgaaagaatgactgtggcaattgaacttagcaactggttaaac
gatgcaagttacaccctgcagtctgttgtacaatgttatggcctccttgtcccccttatt
tatcacaagatttttttagtgccagtagttcagatcctcattaaatgcttggctgttctc
caagaaattccaagtgctactttgcaagggagacaggaaggatgttatgagagtattcag
catatgatagcttgtacttcatatcatatagcaaaggtactacattcatggaaagagtat
gaacttgcagtaattatcattaactatgggaaaaatttgttgatttcaccagcagcttta
cctggcctgtcaggagatgtaaaaactaaagaaacatacactggcaaagagaaccgttct
tcaagggcatgccatttagctgcaatggcaaaagcagcagaaaatctgagtactcttgag
tcaagtctcctcaagctgacagaaccaggtcttggaacacaacttacaggaaaggaatgt
cctttggtcctctaccctgtaatttcatgttggacatcagagcatgcttatcaagaagtg
cttaaattcagagggcaaacacgtttccttgagttttttgttcaacttttgcacaaagtc
ctgaacgaagagaagtttcaatgtgttctggagtgggcagacagtgtggaagtttacttg
aaaaggaggaatgagaacttccttggtactgatggaatttcaacacaagtaagatctctc
aatctgggtgaaagcacacatgctgcaggaggtcagaaaggaaaggatacctcatcttca
aagaaaccaaaggcatcaccttcgaagaaaccaaccaaaaaagccatgcctaagaaagga
cctcttagagaatatttaatgaaaaatccagatgcaatgaattctccagaaacacaaaag
aaaggcaagaataagttgaagaaattagctcatcaaaccttagtgatgctgctgagtaaa
tatgtaacccgaagtcagttttgtcaaatgtgtcttgaagagatgccctggaagtctcag
atgaatatctatctggcagttgcacactaccatttatttaaaaagaacctggaagagcaa
tataatattgaaattagtggttcacagctgctggacagttacaatattttggatcctgag
atattctcattaaacaattctggcaccgtactggcgagagaagttgtagaggataataca
ggaaaaccaactcctcctctccttgaaaagtcagaagtgactgaaacccaaacctttaca
aataaatctcctaagaacagaaataaacagagtcaaacttctcgaagtcgtataacgaag
acccatggagaacaggacaagtttcaattgaatacccttttactgaagcattttacaagc
atctttttgcatttgaaaagagcagtggttcttgctcaccgtggtggccactggacattg
cttcaaaatgcttgtcgagaactttggaactatactcaagaatttcagttgattgctaac
cagtcgcattcccatacggatgcatttcccatcagctgggattttctttggaacactatc
tggttgccattttattttgcatcagacatgatcattgatatgataattgacctacaagaa
agcagttctcttaagattgtggatcccgaaggagacttttgcattcccagttgtttagga
ggtattgtggatgagaatggtggttctaatcttcatcctcagcctcccctggatgatgtg
aatgtggttgacctgagatggatatgtaatctgattcttaaaacaatagaattgttatat
caaatgaagaagtgggaagcgttggtacacatagctgtacaatttaacatatttacacat
gagaggttcacagaacaagtaagtccactgctggtgtacgctcagaggcagctgctggaa
aggatacagcagttcagcgggccagacagccatgaatctcctttcacaaaatgtctgtct
gatgatgcccagaagatgagctgcagaaactacatagggtacaaattacagctgcctgtt
gctcgttctgcccgtgaaggagtttttcctggatgctttttcaatcctgagacgaataat
gattttacagatcacaatcaagcaaaagctctagtttgtgtgcctcttgatgtgaatgat
acactgaaatgttttagagaaactctagaaaagtctaaataccaaagcagagcactgaga
cacagcagaaaactactttcattatttcttgcacacacacaagaaaatgttggaaaagca
atcagcagtcatatctcttcaagcagaaagctgaaatttaacgtggcagatgaagtgata
tttctaccgacaccatgtgacctttctcaagaaaaatataatttctccagtatggttgag
agtagaccaataccaaagtcacagctttccgtaattatctcttcctatgaacgaacaata
ggaatgcttgaaacgcgtaaccagagagacctcaaggtgcagggtctacatgaacttgga
aatcttcacttttatgctggaaataaaagagctgcttttaaatattggtgtcaagccctt
gatgaaacactcaacattgctgatgctattaacacctggcaagagacaatttttccaaaa
gatgctacagactgctttgctgttggaagatcaactgatatgagtcagaaatttctttct
caggctggagcttgggggtgtttacatgcagcagtcctagtggctaagatagctcagtat
ataacaatatcacagatgaaattaagaacaaaacactgctatttttctgctatacttttt
aagaccctgtttagagcttctcttccacatccagcatctgactatgactttgtacaatat
gaaaccaatattcttattcctggtattgacctgttctctgatcgctacagagctgatatc
tctactgtagttgcaagtctgaatttcattatgtttgaactacattgtgcgaaacaaaat
ttaataattttacctctgttcacattataccaatatattgtatctgagatttgtaaggac
ccggctaaatgtattgaaggaagaatcctcaagattaaagtatttacagacataggattt
tttactgaggcctttcatgaactgtctttgcttatttcgggagagagaattccatggaaa
ataccagcaggatacagatatactgaacaaatgcaggccttacacaaatttgattcctca
aaatctctcatgactgctacaaatttgcaggtattggaagatacatttaattggagtctg
tctttaacagtggtgccactgtgcaacccacaaattatgaataaattaaccttagccaaa
atacatctcatcatttgtctttctgccacaataaataatatacctgaaaaagttgaaaaa
aatgtatattctgttgacaacagcagcttgccagagccaaacaaaactacaacatcaaat
gtaaaagttgatgatgatcagaattcaagacaacaggagcaaagagagagaatggtgcat
cttgttgactgtaaagatgaattaaatatggccatgctgaaggggattttattgtcagaa
gctgaagaaagtcttagctatcttgtacaggacatacagaaaaaatgtgatggggacata
tcttggtattctgtggaagacttagaggctcttattgaggccaaacttgaacttgcctct
atttctcagcaaaggcatcaaggagctctgagtgttgctttggctttctctgcaattcga
cttctccaagatgcaaaagtttttagcatggacgtggcacattttcaggaagaaaaggat
gaaagggagtgtttggactccaccactgaaggtgttgacctccctcccggtgtaacagca
caagggcacgtgaatgaacgtttgtggctgaggtgtcgggcaatgttagtgactgcactc
atgacacagatacgtggtgttggtgatgtgaaaggaaatgatgtggctgagcgcagaagt
gtgataaaagaagtaatattagaggcagaagcctttggtgatattgagactcaggctgaa
atgatgatgcaagctgcaattcttgacctgcaagaaagacatcctgtggcagacattaaa
cttcttttgcagaaaatcatcagtttactccaagagaatacatttatttccctgccagct
tctttgactcttgtgaaaagtatgcttctgctggcagacatactgccactgcaaatggta
gaggattcagaacataactcttctgcagtggaaccgttaaacttgcttgtcttggcacat
gagcttaccattaaaacaatttttgattgtggtgaacccgttgaatggcaaatagatgac
agtacattgacttgcctggtcttacccgctaagaatgtctacctgccacatattaacttg
ctagcccaagtcaaaatgaaaattggacacacattagctgaaaaagtagcttctacggct
tcacgagatcatttgcaatggctacatgctctcaggcatttagaatcagcattgaatctt
tgcagagcatctgcaacaaaaaaattagatatggaagctgagcttctttttcagataggt
caggtagaacgccagataactgaaacaggcaataagaactcatctcaagctgttggaacc
ctgttggaagctattaagctcagccagcaacatgatcaaaaatatgagttaataagacgc
tcataccttgaaatagcactatcatatttgtattttgccaaatatgatgaggatgtatca
gaaacaaatcagtcgacctcttctggaggactgtcttctgtggaggctatgaaatcagaa
gtctacaaagtacaagcctggattgcaataagagcagctacacaggtcagtgaagctgtg
cttgcttctcagcggttaattggaatgaagactgttaaagaacagactatgaaggatgaa
gtgcaacaaaaaatcccagaatttgcttctatggatcttttttcttcatacagagatttc
atatctgttgcagatggatacagtgttgcctctgaaactcccgaagtatcttctactgaa
agcaaacaaatcatagaagacagtcaaaatgaaagtgaaggaacagaaagtcttgtcacc
aaggccagccagaaaaaagatacaataacatgggttcacatgattcagtaccacaatcat
ttaaaaagaatttataacacaaaactatctggacctggactgctttctgcaagaggtgga
caccttggtttgatttctgacacaggaattgttctgcgcatagcagaaatgcattccttc
cttgaaaacaatttgtttgaatattcaatgtgctgtcttgagaattttccaagagaacta
catgatgtagaaacgccactcagtagtgcaactgattcctcagaggtgtctcttgatgtt
agtgaaattacatcagaagcctcacatgtgagaatagcttctccagtttctgtcactgca
gaagatgatgagcggacagagagtagggcagcaagtgcttcgaataaggaaattaacatt
cagtggtatattccttctgtggcaaagccatcaaaccatacagaaactaaggttttgttg
ctttatgcttataatattatccctgtcaagactaacgacatcacaatttttagtccgtct
gtgttttcaggcaacttatggattccattggctagaattatttctttgagggagaaattg
tctgatctgaaggagcaagttgaaacgttgatgcaaggcttttcaactttagtacctaca
agatttgaggagcaaagtgaaactttgaaaataagtccttcaattaaacccaaaacgagt
gatacaaaagtgcatcttgatgaaaaaacagaagaaattgctaaaaagtgtttatttgaa
gtcaaagcactactgtctgttgttccagccctgtcctctccattaactgagatcccattt
gatgttactttgcaatcaataacaaatttggaagatatgtttgatcttgtcaatggatgt
ataatacctgaaggaaatctttttgattggattgtttctctgcttcattga
DBGET
integrated database retrieval system
