Hirundo rustica (Barn swallow): 120752545
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Entry
120752545 CDS
T09369
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03030
DNA replication
hrt03410
Base excision repair
hrt03420
Nucleotide excision repair
hrt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
120752545 (RFC1)
03410 Base excision repair
120752545 (RFC1)
03420 Nucleotide excision repair
120752545 (RFC1)
03430 Mismatch repair
120752545 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrt03032
]
120752545 (RFC1)
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120752545 (RFC1)
DNA replication proteins [BR:
hrt03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
120752545 (RFC1)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
120752545 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_14
AAA_22
Rad17
AAA_30
BRCT_2
AAA_5
RuvB_N
AAA_16
AAA_33
AAA_18
AAA_17
RNA_helicase
nSTAND3
AAA_7
TIP49
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
120752545
NCBI-ProteinID:
XP_039919690
LinkDB
All DBs
Position
5:complement(22720359..22753879)
Genome browser
AA seq
1142 aa
AA seq
DB search
MAANPAARETNQDIRKFFGVVPPGKRQECGTVIKSEKIKNGEGPSSGKKREKETKVNNSP
NDDDSKQKRTKKKRRIIYDSDSEEEVQSVKKSKKPPEKKAATSKLGKAVKQDPVVYISET
DEDDDFANKRISLKPKENGTSAVGCPGTNSVKKEVKPQAKSKPLSPVKQTPTSALDFFGT
RSVQRSEKKLVASKRKEPSESRDSTLDDEAIARQLQLEEDSELERQLHEDEEFARTLAML
DETPRKKKARRDAEGEQTVLSTTSSPNSTAGYKQSETVKATNSAGTARNYSAKPQTKSEQ
LKGSHLSPQSSDGKKEEIAEKERGAQNSLSREKAASGKEEKTPPKKEKVSPKKSESISPE
DSEKKRNNYQAYRSFLNREGPKALGSKEIPQGAENCLEGLTFVITGVLECIERDEAKSLI
ERYGGKVTGNVSKKTNYLVMGRDCGQSKCEKASTLGTKIIDEDGLFDLIRTMPGKKSKYE
LAAEAEAKKVEPKPKKTPQKAEAGKRNFSPFKREANNKKYKSTPEKGDTVRSVKKETTAV
RKLTDFKRQTVEEKEASKPKGNLVSEVNEDGTERLLWVDKYKPVSLKAIIGQQGEQSCAN
KLLRWLRNWHKNTLEDGQAKPSKTGSKDDGTGFKAALLSGPPGVGKTTTAALVCKELGYS
YVELNASDTRSKNSLKEVVAESLNNTSIKDFCCGASSSVSRKHVLIMDEVDGMAGNEDRG
GIQELIGLIRHTKIPIICMCNDRNHPKMRSLVHYCLDLRFQRPRLEQIKGAMMSIAFKEG
LKIPPPAMQEIILAANQDIRQVLHNLNMWCAKDKSLTYDEAKTDASRAKKDIKLGPFDVV
RKVFATGEEAARMSLIDKSDLFFHDYSLAPLFVQENYVHVKPAAAGGNLKKHLVLLSKAA
DSICDGDIVDRQIRSKQNWNLLPTQAIYASVLPGELMRGYMSQFPVFPSWLGKFSSTGKH
DRIIQELAMHMSLRTQTCKRTVNMEYLSYLRDALVQPLKDFGADGVQQAIACMDSYCLMK
EDVENIMEISTWGGKPSPFSKLDPKVKAAFTRAYNRETHLTPYSLSSVKASKRQSGSAVT
LDLSEDLNVEEIQSDEDEQDTVDSDAMIKQKKVKSSKLPKREKNEETTKKEGKRKEKTRH
LE
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaccctgcagctcgtgaaaccaaccaggatatccgaaaattctttggtgtt
gtacctcctggaaagcgacaagaatgtgggactgtgataaagagtgaaaaaattaaaaat
ggtgaaggaccctcaagtgggaagaaaagggaaaaggagactaaggtgaataattcaccc
aatgatgatgattccaaacaaaagcggacaaaaaagaagagaagaatcatctatgattca
gattcagaagaggaggtgcagtcagtgaaaaaatccaagaagccacctgagaaaaaagca
gctacttcaaaacttggtaaagctgtaaagcaggatcctgttgtttatatttcagagaca
gatgaagacgacgattttgccaataaaagaatttccctgaaaccgaaggagaatgggacg
tcagcagttggttgtccaggaacaaacagtgtgaaaaaagaagtcaaaccacaagctaag
agcaagcccctctctccagtgaaacagactcccacctccgcgcttgatttctttgggacg
aggagtgtccaacgctcagagaagaaactggtggcaagtaaaaggaaagagccttcagag
agcagagacagcactctagatgatgaggccattgctaggcaactgcagcttgaagaagat
tcagagttggagagacagctgcatgaagatgaagaatttgctagaactctggccatgttg
gatgaaacaccacggaagaaaaaggctcggagagatgcagaaggagagcaaacagtactg
agcaccaccagcagccctaattcaacagcaggatacaagcaatcagaaacagtgaaagca
acaaactcagctggtacagccaggaattattctgcaaagccacaaactaaatcggagcag
ttgaaaggttctcatttatccccacaatcatctgatggtaaaaaagaagagattgctgaa
aaggaaaggggtgctcaaaattcactatcaagagaaaaggcagcttcagggaaagaagag
aagacaccaccaaagaaggagaaggtttctcccaagaagagtgagtctataagtcctgag
gactctgaaaagaagcggaacaattaccaagcttaccgaagcttccttaatcgtgagggc
ccgaaagccctgggttccaaagagatacctcagggagctgaaaactgcctggaaggcctg
acatttgtgattacgggtgttctggagtgcattgagagagatgaggccaagtctctgatt
gagcgttacggaggaaaagtaactggcaacgtcagcaagaagacaaattacctggtgatg
gggagagactgcggccagtccaagtgtgagaaggcatcaactttaggtacaaaaattatt
gatgaggatggtctgtttgatcttattcgaactatgccaggcaaaaagtccaaatatgag
ctggcagctgaagcagaggcaaagaaagtggagccaaaacccaaaaagacgccacagaaa
gctgaagctggaaaaaggaattttagccccttcaaaagggaagctaataataaaaaatac
aaatctactcctgaaaaaggagataccgtcagatctgtcaagaaagaaaccactgctgtt
cgaaaacttacggacttcaaacgtcagactgtagaggagaaagaagcctccaaacctaag
gggaacttggtttctgaggttaatgaggatggcacagagagattgctatgggtagataaa
tataagcctgtatctcttaaggcaattattggacagcagggtgagcaaagctgtgccaat
aaattgctccgatggctcagaaactggcacaagaacacgttggaagatggacaagcaaaa
cccagtaaaactggaagcaaagatgatgggacaggctttaaagcagcattactttctggt
ccacctggagttggtaaaactactacagctgctttggtttgtaaggaactggggtatagc
tatgtggagctgaatgccagcgacacccgcagcaagaacagtctgaaggaagtggttgct
gaatcacttaacaacaccagcatcaaagacttctgttgtggtgcatcttcatcagttagc
aggaagcatgtattgatcatggatgaagtggatggtatggcaggcaatgaagacagagga
gggattcaggagctgatcggattgatccgacacacgaagattcccatcatttgtatgtgc
aatgatcgcaaccatcctaaaatgcgctccctggtccactactgtttggatcttcgtttt
cagagacctcgtctagaacagatcaaaggtgccatgatgtctattgcatttaaagaaggt
ttaaaaattcccccacctgctatgcaagagataatcctggcagcaaatcaggacatcaga
caggttttgcataatcttaatatgtggtgtgcgaaagacaaatcactgacttatgatgag
gctaaaacagatgccagcagagccaaaaaggacatcaaactgggccctttcgatgttgtc
cggaaggttttcgctactggagaggaggctgctcgtatgtctcttatagacaaatcagat
cttttcttccacgattactcgctagcaccactctttgtccaagagaattatgtgcatgtg
aaaccagctgctgctggaggtaatttaaagaagcacttggtgctcttgagtaaagcagct
gatagtatatgtgatggtgatattgtggacaggcagattcgtagcaagcagaactggaat
cttcttccaacacaggctatttatgcaagtgttctcccaggggagctgatgaggggttac
atgtcccagtttcctgtctttcccagctggctggggaaattctcatccacaggcaaacat
gatcgtatcattcaagaactggcaatgcacatgagtctcagaactcagacgtgcaagagg
acagtaaatatggaatatttgtcatatttgcgggatgcacttgtccagcccttgaaagac
tttggagcagatggtgtacaacaagctatagcatgtatggactcctactgcttgatgaaa
gaagacgttgaaaatatcatggaaataagcacatggggaggcaaacccagtcctttttca
aagctggatcccaaggtcaaagcagcttttacacgtgcctacaacagagagacacatctg
actccatattcacttagttctgtcaaggcatctaaaaggcagtcgggatctgcagtgacc
ttagatctgagtgaagacttgaatgtggaagagatccagtctgatgaggatgagcaggat
actgttgacagtgatgcaatgattaagcaaaaaaaggtgaagtcttccaagctgccaaaa
agagagaaaaatgaagaaacaacaaaaaaagaaggaaaaagaaaagagaaaacaagacac
ttagagtaa
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