Hirundo rustica (Barn swallow): 120752562
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Entry
120752562 CDS
T09369
Symbol
POLR2B
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03020
RNA polymerase
hrt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120752562 (POLR2B)
09124 Replication and repair
03420 Nucleotide excision repair
120752562 (POLR2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrt03021
]
120752562 (POLR2B)
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120752562 (POLR2B)
Enzymes [BR:
hrt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120752562 (POLR2B)
Transcription machinery [BR:
hrt03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120752562 (POLR2B)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120752562 (POLR2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
120752562
NCBI-ProteinID:
XP_039919742
LinkDB
All DBs
Position
5:complement(53913984..53930301)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDADEDMQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSML
ARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLS
HLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGY
HLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMSV
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgacgcggacgaagatatgcaatatgatgaagacgatgatgaaatcacccccgac
ctgtggcaggaagcctgctggattgttattagctcctattttgatgaaaagggtttagtc
aggcaacagttggattcctttgatgagtttattcagatgtctgtgcagagaattgttgaa
gatgctccaccaattgatttacaagctgaagcccagcacgcctcaggagaagtggaagag
ccaccccggtatctgctgaagtttgaacaaatctatctctccaaacctacacattgggaa
agagatggagcaccctcacctatgatgccaaatgaagccagactgagaaaccttacgtat
tctgcccccttgtacgtggatataactaaaacagttattaaagaaggggaggaccagttg
cagacccagcatcagaaaacctttataggaaaaattcctatcatgttgcgttccacgtac
tgcttgctgaatggcttaactgaccgtgatctttgtgagctgaatgagtgtccacttgat
cctggtggctacttcatcattaatggatcagaaaaggttctgattgctcaggagaaaatg
gctacaaacacagtgtatgtgtttgcaaagaaagattcaaaatatgcctacacaggagag
tgtagatcttgtctggaaaattcctcccgaccaacaagtactatatgggtcagcatgctg
gccagaggtggacagggggcaaagaagagtgccattggtcagcgcattgtagcaactctg
ccatatatcaaacaagaggtccccatcatcattgtcttccgtgcactcggctttgtgtcc
gacagggacattctagagcacatcatatatgattttgaagacccagaaatgatggaaatg
gttaaaccatctctggatgaagcatttgtcattcaggagcaaaatgttgccctaaacttc
attggctcaagaggtgccaagccaggtgtcaccaaagaaaagagaatcaagtatgccaaa
gaagtcttgcagaaagaaatgctcccacatgttggtgtcagtgacttctgtgaaaccaaa
aaggcctattttctagggtatatggttcatagactgttgctggcagcgctgggaagaaga
gagctggatgacagagatcattatggcaacaaaagactggatcttgctgggccactcctg
gctttcctattcagaggaatgttcaagaatttgctgaaggaagtgagaatatatgcacaa
aagttcattgacagagggaaagatttcaacttggagttggcaattaaaacaagaattatt
tcggacggtttgaaatattcgttggcaactggaaactggggtgaccagaagaaagctcat
caggccagagcaggagtatctcaggtgttgaaccgcctgacttttgcatccacgctttcc
cacctgagacgcctgaattctccgattgggagagatggaaaactggccaagccccggcag
ctgcacaacaccctgtggggaatggtttgccctgcagagacccctgagggccatgcagta
ggacttgtgaagaacttagccctgatggcttacatttctgtggggtctcagccatctcca
attctggaattcttggaagagtggagtatggaaaacctagaagaaatatctccagcagca
atagctgatgctaccaagatatttgttaatggctgctgggtaggaatacacaaagatcca
gagcagctgatgaataccctaaggaagcttcgtcgtcagatggacatcattgtgtcagag
gtctcgatgattagagacattcgtgagcgagaaatccgcatctacactgacgcaggcaga
atttgtcggcctcttttaattgtggagaaacagaagttgctgctgaagaaaaggcacatt
gaccagctgaaggaacgagagtataacaattacagttggcaggatctcgtggccagtggt
gtagtagagtacattgacaccctggaagaagagactgtgatgctggcaatgactccagat
gacttgcaagagaaaggtgtggcatattgttcaacgtacactcactgtgagattcaccca
tccatgatcctgggagtgtgtgcatccattatccctttccctgatcacaaccagtctccc
aggaacacataccagtctgctatgggtaaacaggctatgggagtctacattaccaacttc
cacgtccgtatggatacgctggcacatgtgttgtattatccccagaagcccctggtaaca
actcgctccatggagtacttgaggttcagagagctgccagcaggtatcaactcgattgta
gccattgcatcatacacaggctataaccaggaagactctgtcattatgaaccgttctgct
gttgacagaggcttttttaggtctgtgttctatcgctcatacaaagagcaggagtctaag
aaagggtatgaccaagaggaagtttttgaaaagcctacacgtgaaacctgccaaggtatg
agacacgcaatctatgacaaacttgatgatgatggtttgatagcccctggggtacgtgtg
tctggggatgatgtcatcattggcaaaacagtcacactgccagaaaacgaagatgagctg
gagagcaccaacagacgcttcaccaagagagactgcagcaccttcctgcggaccagtgag
actgggattgtagatcaggtcatggtaaccctgaaccaggaaggatacaagttctgcaag
attagggtacgttctgtaagaattccacaaattggagataaattcgctagcagacacggt
cagaaaggaacctgtggtatccagtacaggcaagaggatatgccctttacatgtgaaggc
atcacacctgatatcattatcaacccccatgccatcccttcccgcatgaccattggtcac
ttgattgagtgtcttcagggcaaggtgtctgcaaacaagggagaaattggtgatgccaca
ccttttaacgatgctgtcaatgtgcaaaagatttccaaccttttatcagattatggctat
catctaagaggaaatgaggtcctctacaacggcttcactggtcgaaaaatcacatcccag
atcttcattggtcctacctattaccagcgcttgaagcacatggtggacgacaaaatccat
tctcgtgcacgagggccaatccagatccttaacagacagcccatggaaggcagatctcgt
gatggtggccttcgctttggagaaatggaacgagattgccagattgctcatggagcagcc
cagttcttgagagaaagattgtttgaagcttcagacccataccaggtccacgtgtgtaac
ctctgtggaatcatggccattgcaaacacgaggactcacacctacgaatgccgcggatgc
cgtaataaaactcagatatctttggttcggatgccctacgcttgcaaactcctcttccaa
gaactgatgtctatgagtattgcacctcgtatgatgagtgtttag
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