Hirundo rustica (Barn swallow): 120753089
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Entry
120753089 CDS
T09369
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120753089 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrt03021
]
120753089 (POLR1A)
Enzymes [BR:
hrt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120753089 (POLR1A)
Transcription machinery [BR:
hrt03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
120753089 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box
Motif
Other DBs
NCBI-GeneID:
120753089
NCBI-ProteinID:
XP_039920931
LinkDB
All DBs
Position
5:5281223..5309597
Genome browser
AA seq
1708 aa
AA seq
DB search
MRPPKVVPWRRLVGVSFGMYTAEEIRKLSVKPITNPQYLDNVGNPAVNGLYDLALGPPDS
REVCATCMQNFSNCPGHFGHIELPLTVYNPLFFDKLYLLIRGSCLNCHMLTCPRAVVHLL
LSQLKVLEKGLLHAVHDLEIILNRFVEQCADATGSEIEEELNRHVQEMLQSSQMRDRCSN
VKNVCECRNKLISQFWKVHLGSKKCPNCKSRRSLVRKEHNSKLTVTYPSTVYHKSGGEGI
LDETAGIDESQLGKRGYLTPMTAKEYILALWKNEGFFLRYLFPGMDPHDSSGFSPDLFFL
DLLVVPPSRYRPVNRVGDRLFTNGQTVNLQAVMKDAQLIRKLLVFMAKEQCQPIKITEEI
QTETGGDSEPLDRSVLTTIPGQSIADKLYNAWIRLQSHVNIVFDSDMDKLITEKYPGIRQ
LLEKKEGLFRKHMMGKRVDFAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKE
LRQAVINGPRVHPGASMVINEDGSRTVLSATSLTQREAIAKQLLTPSSGAPQTGLKIVCR
HIKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQ
SELGRAEAYTLAITDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRG
LTDKKGRIKVFPPAIMKPQRLWTGKQVVSTLLINIIPDNHAPLNLTGKAKIGGKAWVKGP
AKGCLNLDSMCESQVIIRDGELLCGVLDKAHFGSSAYGLVHCCYEIYGGRTSGKVLTCLG
RLFTAYLQLYRGFTMGIEDILVKPEADHKRKKIIERSRQSGVEAVRAALNLPETASCEEV
QGKWQDAHLCKDQRDFNMVDMKFKEEVNSYNNDINKVCMPLGLHRSFPENNLQLMVQSGA
KGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIRPS
EFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGED
GLDIPKTQFLQPEQFPFIAENYEVIQKTNRLDEALARMESHQANQQFKAIKKWRARHQNS
VQREGGFLLFSQKKLPSLKAQLPGGEIKNGRDPATLQLLKMWYELDEKKQRKYLKKTSKC
PDPSLGVWRPDTYFASVSETFESGVEGYVSKWESESSRSYMHPALSSDRLKDLLYLKWQR
SLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTP
MMSVPVFNTKKALKKVKQLKKQLTRVCLAEVLQKVDIEESLHVKDKLNKHRLYKIKFDFL
PHEYYREEKCVKPRKILHFMETKFFKVLLEAIKRKTTKMASFNEVSTRKTTRKDLDDDQD
KALNSLEAVAEEEENIVDAEPDEGDGDATETKRRKNQEEEVDYESEEENGEENIKDNAED
EEAESEKEEGTPGAEEDQNRAEGEDSQHLSFVSQTKKGKDGLLQSAQVRVSAVVESHPSI
QDYTFDTENELWCEVSLALPLTKVYFDLSSLLGSLARSTVIHEVKGITRCLLNESTNKEG
QKESVLQTEGINLAELFRYSDILDLNRLYCNDIHAMAKNYGIESALRVIIKEIKDVFAVY
GIVVDPRHLSLVADYMCFEGIYKPLNRIGIQSNSSPLQQMTFETSYKFLKDATMMGAHDE
LRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atgaggccgcccaaagtggtgccgtggcggcggctggttggggtgtccttcgggatgtac
acggccgaggagatcaggaagctgagtgtgaaacccataacaaaccctcagtacctggac
aacgtggggaatccggctgtaaatggactgtacgacttggccttgggacctccggactcc
agagaagtgtgtgcgacttgcatgcagaacttcagcaactgccccgggcactttggccat
atagaactgcctctgactgtctacaaccccctgttctttgataaattataccttctaatt
cgaggatcttgtttgaattgccacatgctgacatgtcctcgagctgtggttcacttactg
ctgagccagctgaaggtgctggagaaagggttgctccatgctgtccatgaccttgaaatc
attctgaacaggtttgtagagcaatgtgcagatgcaacaggctcagaaatcgaagaagag
ttaaatcgccacgttcaggaaatgttacagagttctcaaatgagagatcggtgttctaat
gtcaaaaatgtgtgtgagtgcagaaataaactgatatcacagttctggaaagtacacttg
ggttcaaagaaatgcccaaactgcaaatccaggagatcactggtgcgaaaggagcacaac
agcaagctgacagtgacctatccctctacagtgtaccataagtcaggaggggaaggcatt
ctggatgaaacagcaggtattgatgaaagccagttagggaagagaggatacctgacacca
atgactgccaaggaatacatcctggctctgtggaagaatgaaggtttctttctgcgttac
ctcttccctgggatggatccccatgatagttcaggattcagtccagacttgtttttttta
gatctacttgtggttccaccttcgaggtatcgccctgtgaatcgcgttggagatcgcctg
ttcacaaatgggcagacggtgaacttgcaggctgtgatgaaagatgcccagttgatacgg
aagctcttggttttcatggccaaagaacagtgtcagccaataaaaattacagaagaaatt
caaacagagacaggaggggatagtgaacctctggaccgttctgtgctgacaacgattcca
ggacagagcattgcagataagctgtacaacgcttggatacgtctccagagccatgtcaac
attgtgtttgatagtgacatggacaagctgataacagaaaagtaccctggtattcgtcag
ctgttggagaagaaggaggggctgttccgcaagcacatgatggggaagcgcgtggatttt
gccgctcggtccgtcatttgccccgacatgtacattgggaccaacgagattggcatccct
atggtatttgccaccaaactgacttaccctcagccagtgactccctggaatgtcaaagag
ctgaggcaggctgtcatcaatggccccagggtgcacccaggggcctccatggtcattaac
gaggacgggtctcgcacggtgctcagcgccaccagcctgacccagcgcgaggccatcgcc
aagcagctcctcaccccctcctcaggggctccccagacaggcctgaagattgtgtgtcgg
cacattaagaacggggacgtgctgttgctgaaccgccagcccacgcttcacagaccttcc
atccaagctcaccgcgcccgcatcctgcccggggagaaggtgctgaggctccactacgcc
aactgcaaagcgtacaacgccgacttcgacggcgatgagatgaacgcccacttcccgcag
agcgagctgggcagggcggaagcctacaccttggccatcactgatgagcagtacctggtg
ccaaaggatgggaagccacttcctggcttgatccaggatcacatgatttctggagtcagc
atgacaatccggggctgctttttcaccagagagcagtacatggagcttgtgtaccgaggg
ctgacagacaaaaaaggaagaattaaagtctttcctcctgccattatgaagccacagcga
ttatggacaggaaagcaggtggtttccacgttgttaataaacatcattccagacaaccat
gctccactgaatttgactgggaaagcaaaaattggtgggaaagcctgggtgaagggacct
gcaaaaggatgtctgaatcttgattcaatgtgtgaatctcaggttattatcagagatggt
gaattgctctgtggagtcttggacaaagctcactttggcagctctgcctatgggctggtg
cactgctgctatgagatctacgggggtagaaccagtgggaaagtgctgacgtgcctgggg
cgcctcttcactgcttacctgcagctctacaggggttttaccatggggattgaagatatt
ttggttaaacctgaagcagaccacaaaagaaagaaaatcattgaaagatcaaggcagagt
ggtgttgaagctgttcgagctgctcttaatttgccagaaacagcatcatgtgaggaggtc
caagggaagtggcaggatgcccatctctgcaaagaccagagggattttaacatggttgat
atgaagttcaaggaggaagtaaacagctacaacaatgacatcaacaaggtttgcatgccc
cttggtctccacaggagctttccagagaacaatttgcagttgatggtacagtcaggagcc
aaaggatccactgtaaacacaatgcagatttcttgtttgctgggccagattgagctggaa
ggccgaagacccccactgatggcatctggcaaatcgctgccatgtttccagccttatgat
ttttcccctagctcaggaggatttgtgactggcagatttctcactgggatcagaccttct
gaattcttctttcactgcatggctggcagggaaggtcttgtggacacagctgtcaaaacc
agccgttctgggtacctgcaaaggtgtatcataaaacatttggaaggactggtagttcag
tatgacctgactgtacgagacagtgatggcagcgtggtgcagtttctgtatggagaagat
gggcttgatatccctaaaactcaattcttacagcctgagcagtttcctttcattgcagaa
aactatgaggtcatccagaagacaaaccgtctggatgaagctttagcaaggatggagtct
caccaagctaaccagcagttcaaagccatcaaaaagtggcgagccagacaccaaaactct
gtgcaaagagaaggaggctttctgttgttttcccaaaagaaactgccaagtttgaaagca
cagcttccaggaggtgaaataaagaatggaagagatcctgctactttacagttgttgaag
atgtggtatgagcttgatgagaagaaacaaaggaagtatctgaagaagacaagcaagtgt
cctgacccaagccttggggtttggcgtccagatacttactttgcatctgtttcagaaaca
tttgaaagtggagttgaaggctatgtcagtaaatgggaatctgagagcagccggagttac
atgcacccagcactttcttctgacagattaaaggatctgttgtatttaaagtggcagcgt
tctctttgtgacccaggagaagctgtggggcttcttgctgctcagagtattggggagcct
tcaacacagatgactctgaacacctttcactttgctggcagaggtgaaatgaatgtcaca
ctgggtattccaaggttgcgggagatactgatggtggccagctcaaacattaaaacccca
atgatgagtgttcctgtgttcaataccaagaaagctctcaaaaaggtgaaacagctaaag
aaacagctcacaagagtgtgcttagctgaggtcttgcagaaagtggacatcgaggaatcc
ctgcatgtgaaggacaagctgaacaagcatcgcctctacaaaatcaaattcgatttcttg
ccccatgaatattaccgagaggagaagtgtgtgaagcccaggaagatcttgcacttcatg
gaaacaaagttctttaaagttctcctggaagcaattaaaaggaagacgacaaagatggcg
tcttttaatgaagtcagcactcggaagacaactcggaaggatttagatgatgaccaagac
aaggcactgaatagtctggaagctgtagcagaggaagaagagaacattgttgatgcagaa
cctgatgaaggagatggtgatgctacagaaacaaaacggaggaagaaccaggaagaagag
gtcgattatgagagcgaagaagagaacggggaggaaaacattaaagacaatgcagaagat
gaagaggctgaatctgaaaaagaggaagggactcctggtgctgaagaggatcagaataga
gcagagggtgaagattctcagcatctttcctttgtgtctcagaccaaaaaagggaaagat
ggattgcttcagtcagcccaggtgcgagtgagcgctgttgtggagagccacccatccata
caggattacacatttgacaccgaaaacgagctttggtgtgaggtttccttggcactgcca
ctgaccaaggtgtattttgacctctcctccctgctggggtccctggcgcgcagcacagtg
atccacgaggtgaagggcatcacacgctgcctgctgaatgaaagcaccaacaaggaggga
cagaaggaatccgttctccagacagaagggataaacctggcagagctcttcagatactct
gatattttggacctgaacagactttattgcaatgatatccatgccatggctaagaattac
ggaattgaatcagccctgagggtgattataaaggaaataaaggatgtatttgctgtatat
ggaattgtggtagaccctcggcacctttcacttgtggcagattacatgtgttttgaagga
atttataaaccactgaatcgcattgggattcagtccaactcctcccctctgcaacagatg
acatttgaaaccagctacaaatttttgaaggatgcaacgatgatgggtgcccacgacgag
ctgcgatccccttcggcctgcctggtggtcggaaaagttgtcaaaggaggaactggcttg
tttgacctcaagcagcccctgacatag
DBGET
integrated database retrieval system
