Hirundo rustica (Barn swallow): 120753365
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Entry
120753365 CDS
T09369
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2
KO
K24066
synaptopodin-2
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120753365 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hrt04990
]
120753365 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
hrt04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
120753365 (SYNPO2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Calsarcin
PDZ_2
Motif
Other DBs
NCBI-GeneID:
120753365
NCBI-ProteinID:
XP_039921410
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All DBs
Position
5:64038852..64102610
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AA seq
1092 aa
AA seq
DB search
MLPNCTRKMGTGDYLCIAMSGGAPWGFRLQGGKEQKQPLQIAKVRSKSKAAKAGLCEGDE
VVSINGKPCGDLTYAEIIVLMESLTDVLQLLIKRSSSGINDTVNAERENGKHENIKIEDY
GESTTLQMNAVQEIPHGDLCITEIYSGTHHGAAESNTHFSETKQETTQSHRIPPKVLGTP
TVIVTDEAAVRGTTEERPGAMVELQLSLSEDMHKATNAPAVTLLGAEKCPPSGRGASAQQ
DGSSPLIAVPLSVKEGNIQWSNKVVHFSSSKRIQGAAPSIPRVEVILDCSDREKEAPRSQ
SERGCVDSQVEGGQSEAPPSLLSFAISPEATVQGEDSKHSEKEHRPLKHRARHARLRRSE
SLSEKQVKEAKSKCKSIALLLTAAPNPNSKGVLMFKKRRQRARKYTLVSYGTGELERDED
EGEEGEGEEGDKENTFEVSLLATSESEIDEDFFSDIDKDGKIVTFDWDSGLLEVEKKTKS
GEEMQTLADSTGKGALMFAKRRQRMDQITAEQEEMKASTVQTEEHRETTVTENFQKVSSS
VYQSKEEEISKEQTCVSKSYTDVSQNHSKVVQQNGFGLAPGTNLSFQSSGTQKPASLNKT
AKPFPSGVQNRAAAPFSPVRNVTSPLSDAAAPPPYCSVSPPAEAFYRPVSAPVASKAAPP
PWAATEPTEHIASRDERIAVPAKRTGILQEAKRRSTSKPMFNFKDAPKVSPNPALLSLVH
NAEGKKGTGAGFESGPEEDYLSLGAEACNFMQTQASKQKAPPPVAPKPSLKLSPSAGTPV
SPVWSPSAAASNKPPSFPAPASPQAAYPTPPKSPQYPHSPVHPPSTLDISGPFKGPQASL
ASPNLAPKATPVTPSAGETKPPFEMPPAMSGKGAQLFARRHSRMEKYVVDSETVQANMAR
ASSPTPSLPASWKYSSNVRAPPPVAYNPIHCPSYPPAATKPSSKAAAATKNTKRKPKKGL
NALDIMKHQPYQLDPSLFTFQPPKESLAMKQPLKLSTSKQTLPLPTYLPPGAGSPTRARP
SSVYSVPAYSTQPSFPSNASLPGNESYSPTACSAFSKPETTTSSLFTAPRPKFSAKKAGV
TAQVWKPSVIHE
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgctgcccaactgcaccaggaaaatgggcacaggggattatctctgcattgccatgagc
ggaggggcgccgtggggcttcaggctgcaagggggcaaggagcagaagcagcctttgcaa
atcgccaaggttcgcagcaaaagcaaagcagccaaggctggactgtgcgagggggatgag
gtggtgtctatcaacgggaagccttgtggagacctgacctatgctgaaatcattgttctg
atggaaagcctgactgacgtcctgcagctgcttatcaagagatcctccagtggaataaat
gacaccgtgaatgctgaaagagaaaacgggaagcacgagaacataaaaattgaggactat
ggggagagcaccacactgcaaatgaacgcagtgcaagagataccccatggagatttatgc
atcacagagatttacagtgggactcaccacggagcagcagaaagcaacacacacttttct
gaaacaaagcaagagaccacacaaagccacagaattcctcctaaagtgctaggcaccccc
acagtgatcgtgacagacgaggctgctgtcagagggacgacagaagaaaggccaggtgct
atggttgagctgcagctgtccctctcagaggacatgcacaaggccaccaatgctcctgct
gtgactctcttgggggcagaaaagtgccccccttcaggcagaggagccagtgcccaacag
gacgggagcagccccctcattgcagttcccctgagtgtgaaggagggcaacatccagtgg
tcaaacaaagtagtccacttttccagcagcaagaggatccaaggtgcagctccatcgatc
cccagggtggaggtgatcctagactgctcagacagggaaaaggaagcgcccaggtctcag
tctgaaagggggtgtgttgattctcaagtagaaggagggcagtcagaagcacctccttcc
ctcctctcttttgcaatctcgccagaagccacagtgcagggagaagacagcaagcactcg
gaaaaggagcacagacctctcaagcacagggcaaggcacgcaaggctccgacgaagcgag
agcctgtcggagaagcaggtcaaagaagcaaaatctaaatgtaaaagtattgcactgctg
ctgacggcagctcccaaccccaattccaagggggtgttgatgttcaagaagcgccgccaa
agggcgaggaagtacactttagtcagctacgggactggggagttagaacgtgacgaggac
gagggggaagagggcgaaggtgaagagggggacaaggaaaacacttttgaggtgagtttg
cttgcaacaagtgagtcggaaatagatgaagattttttctctgacattgacaaggacggt
aagatcgtgacatttgactgggacagtggtctgctcgaggtggaaaagaagacaaaaagt
ggagaggagatgcagacgcttgcagacagcacagggaaaggagccctcatgtttgccaag
aggcggcagaggatggatcagattacagcggagcaagaggagatgaaggcaagcacagta
cagacagaggagcacagggaaaccaccgtgacagagaacttccagaaagtgagctcttct
gtctatcaatccaaagaggaggaaatatcgaaagagcagacctgtgtgagcaaaagctac
acagatgtgagccagaatcacagcaaagtggtacaacaaaatggctttggcttagcgcct
ggcacaaacctctcttttcagtcctctggaactcaaaagccagcatctttgaataaaaca
gcaaaacccttcccttctggagttcaaaaccgagcagctgcaccattttcacctgtaaga
aatgtcaccagtcccctttcagatgcagcagcaccacctccttactgctctgtcagcccc
ccagccgaggctttctacagacctgtctcagctcccgtggccagcaaggctgccccaccc
ccgtgggcagccaccgagcccacggaacacatcgcgtccagggacgaaaggattgccgtg
ccagccaaaagaactgggatactgcaggaggcaaagagaaggagcacttccaaacccatg
ttcaatttcaaagacgcacccaaagtaagtcctaatcctgccctgctgtcccttgtacac
aatgcagagggcaaaaaagggactggagctggttttgagtcaggacctgaagaagactac
ctcagtttgggagcagaagcttgtaatttcatgcagactcaagcatctaaacaaaaggcc
cctcctcctgttgccccaaagccttcactcaagctgtctccttctgctggtactccagtt
tcaccagtttggtcgccttcagctgcggcttccaacaagcctccttctttcccagcacca
gcctcacctcaggcagcgtatcctacaccacccaaatctccacagtatcctcattctccc
gtccatcccccaagcactcttgacatttctggtcctttcaaagggcctcaggccagcctg
gcgagcccaaaccttgcccccaaggcaacaccagttaccccaagtgctggagaaacaaag
cctcccttcgagatgccaccagctatgagtgggaaaggagcacagctgtttgccaggagg
cattcccgaatggagaagtatgtggtggattcagagactgtgcaggcaaacatggcacga
gcctcatctccaactccatctttaccagcttcttggaaatattcatctaatgtccgagct
cctccacccgttgcttataatcccatccactgcccgtcttaccctcctgctgctaccaag
ccctcctctaaggccgccgctgctaccaaaaacacaaaaagaaaacctaagaaaggtctc
aatgctttggatattatgaaacatcaaccttaccagcttgatccatctttatttactttc
caacctcctaaggaaagccttgccatgaagcagccgttgaagctgtccacttcaaagcag
acgctgcctttgcctacctaccttccacctggtgctggctctcccacaagggcccggcct
tcttccgtgtactccgtgccggcctacagcacccagccttcgttcccgtcaaacgcctct
ctcccaggaaatgaatcgtattcacccacagcctgctcggcgttttctaagccagaaacc
accacgtcctctttgtttactgctccgaggccaaaattttcagccaagaaagctggcgtc
actgcacaggtgtggaagccgtcggttattcacgagtga
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