Hirundo rustica (Barn swallow): 120753387
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Entry
120753387 CDS
T09369
Symbol
FIP1L1
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120753387 (FIP1L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120753387 (FIP1L1)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
120753387 (FIP1L1)
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Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
120753387
NCBI-ProteinID:
XP_039921470
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Position
5:26689659..26727626
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AA seq
602 aa
AA seq
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MSTGEAERLSADADGAAGDEEEEWLYGDENEAERPEEEKSSVPPPPGSEEEAAENGVVKT
KVAEAEDDSDSDSDDDEDDVQVTIGDIKTGAPQFSYGAAPVNLNIKAGGRAYGSSGAKVK
GLDLDAPGSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAYCEKQKRIRM
GLEILPVTSTTNKITAEDKAMELRPSAEILDGRYHLFKVQQGRTGNLEKELAAQSTKPDF
TSPPALFKSGIPTNRRISGTIDVIGQSITISRVEGRRRANENSNIQVLSERSNPEVDSFT
KPPPFFPPGAPPTHLPPPPFLPPPPTVSTAPPLIPPPGIPITVPPPGFPPPPGGPPPSLI
PTIDSGHSSGYDGRPVRAFSYGSGCVHGTSGKGGQDRTVGALKAAVLYYTEGGKKQWRSM
FLLPIASYLKKSPFHTLQVLHPHGLVFWTPANSGITMHEERRIGNVRERDPEIGIATGTE
TEIETVPETGKGIEITVHLQVLSTVMRNATDTETMQRGATIAIGQVERRKTDTETGDTER
KKRLDTSHLEVTADVVMTVKKGIATEGTNTRSPKEAKKEKKPVVNLLLSRKTLKLPLWNR
LV
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccggcgaggcggagcggctgtcggcggacgccgatggggccgccggggacgag
gaggaggagtggctctatggcgatgaaaatgaagcagagagaccagaggaagaaaaatcc
agtgttccacccccacctggaagtgaagaggaagctgcagaaaatggcgttgtgaaaacg
aaggtggcagaggctgaggatgacagtgatagtgatagcgatgatgatgaagatgatgtt
caagtcaccataggggatattaagacaggagctccacagtttagttatggagcagcacct
gtgaatctcaatattaaggcagggggacgagcttatggatcttccggtgcaaaagttaaa
ggactggatctagatgcaccagggagtattaatggtgtaccactcctggaagtggactta
gattcttttgaagataaaccttggagaaagccaggggctgatctctctgattattttaac
tatggcttcaatgaagatacctggaaagcttactgtgaaaaacaaaagagaatacgaatg
ggtcttgaaattttgccagttacctcaaccacaaataaaatcacggctgaagacaaagct
atggaactaagaccaagtgcagagattctcgatggcagataccatctttttaaggtacag
cagggcagaactggaaatttggagaaagagttggcagcccagtcgactaaacctgatttc
acatctcctcctgccttattcaaatcaggaattccaaccaacaggcggatatctggcaca
atagatgtgattggacagagcatcactatcagtagggtggaaggacgacggcgtgctaat
gaaaacagcaacatacaggttctttcagaacgctctaatcctgaagtagacagttttacc
aagccacctccatttttccctccaggagctccacctactcaccttccaccacctcctttc
ctcccaccccctccaactgtcagtactgctccacctctgattcccccaccaggtatacca
ataacagtgccaccaccaggttttccaccaccacctggcggtcctccaccttctcttata
cccacaatagacagtggacattcttctggctatgatggtcgtcctgttcgtgcattttca
tatggcagtggttgtgttcacgggacttctggcaagggagggcaggacagaacagttggg
gcattaaaagcagcagttctgtattacactgaaggtggcaaaaagcaatggagaagcatg
ttccttcttcccattgctagctatctaaaaaagtcacctttccacaccctgcaggttctg
caccctcatggtctagtcttctggacaccagcaaacagtgggattactatgcacgaagag
agaaggatagggaacgtgagagagagagatcccgagatcgggatcgcgaccgggaccgag
acagagatcgagaccgtaccagagacagggaaagggatcgagatcacagtccatcttcaa
gtgctttcaacagtgatgaggaacgctacagatacagagactatgcagagaggggctacg
atcgccataggacaagtagagagaaggaagacagacacagagacaggagacacagagaga
aagaagagactcgacacaagtcatctcgaagtaacagcagacgtcgtcatgacagtgaag
aaggggatagccacagaaggcacaaacacaagaagtccaaaagaagcaaagaaggaaaag
aagccagtggtgaacctgctcctgagcaggaaaacactgaagctgcccctgtggaatagg
cttgtgtga
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