Hirundo rustica (Barn swallow): 120753637
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Entry
120753637 CDS
T09369
Symbol
VPS50
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hrt04131
]
120753637 (VPS50)
Membrane trafficking [BR:
hrt04131
]
Protein recycling
Others
EARP complex
120753637 (VPS50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
120753637
NCBI-ProteinID:
XP_039922001
LinkDB
All DBs
Position
1:complement(132463184..132541683)
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AA seq
967 aa
AA seq
DB search
MQKIKSLMTRQGLRSPQESVNDLSPIESFRIPTKEELRELHEEPTDPQAQQEIINSIEEV
YFSNDSFDIVKYELERLPPVLSLQELEEYRDKLKQQQAAVSKKVADLILEKQPAYVEELE
RVTSLQSGLQLAAVICTNGRRHLNIAKEGFTQTSLGLLANQRKRQLLIGLLKSLRTIKTL
QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
DTKFQKLQYKDLCTHITSDSYIPCLADLCKALWEVMLSYYRTMQWHENHDQDEAAVVSSV
SDGNNVIGTEENSFDRNYVKKKLEHGLSRIWQDVQLKVKTYLLGTDLSNFKYDDFIFVLD
VISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKTYHRTRLEELRMFLENETWELCPVKSS
FSILQLHEFKFMEQSRSPSVSPSKQPASAVSSTVTLFEQYCNGGNPFEIQADSKDDETED
VLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDAPIKSVSRETLRSRKRSDY
NLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAVYTFFGRN
DMFESTGLGLSSSRLRTTLNRIQESLIDLEVSADPSGTLTAAEERKEKVPSPHLSHLVVL
TSGNSLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAAKKPFLQQFYSQTVSTASELR
KPVYWIVAAKAIDYEQMLLLMANVKWDVKEIMSQHNVYVDALLKEFEEFNRRLNDVSKRV
RIPLPVSNILWEHCIRLANRTLVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPI
PDKEFVETYIKAYYLTENDMECWIKEHREYSTKQLTNLVNICLGTYINKKARQKLLATID
DIDRPKR
NT seq
2904 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagatcaagtcgctgatgacccgccagggtctaaggagtcctcaggagagtgtt
aatgacctcagtcctattgaaagcttccggattcctactaaggaggagctcagagaacta
catgaagaaccaactgatcctcaggcacaacaggaaataattaacagcattgaagaagtt
tatttttccaatgactcctttgatattgtgaagtatgagttagagaggcttcctccagta
ctcagtcttcaagaactggaagagtacagagacaaactaaaacaacagcaagctgctgta
tctaagaaagttgcagatttaatccttgagaaacagcctgcatatgttgaggaacttgaa
cgtgttacgtcactgcagagtggccttcagttagcagcggttatttgcacaaatggaaga
agacacctgaatatagcaaaggagggcttcacacaaactagtttgggactccttgcaaat
cagaggaaacgacagttgcttattggattgctaaagtctttgagaacaataaaaacactg
caaagaactgatgtccgtttgagtgagatgttggaggaagaggattatccaggagctatt
cagctgtgcttggaatgccagaaagctgccagcactttcaaacactacagttgtataagt
gagttaaattcaaaactgcaggacaccttggaacaaatagaggaacaattggacgtagca
ctttccaaaatatgcaagaattttgatatcaatcattacacaaaggttcagcaggcttac
aggttgcttggaaaaacacagacagcaatggaccagttacatatgcacttcacccaagcc
attcacaacaccgtgtttcaagtagtccttgggtatgtggagctgtgtgcaggaaacaca
gacaccaagtttcagaagttacagtacaaagatctctgcacacatattacatcagacagc
tacattccatgccttgctgacctctgcaaagccctctgggaagtcatgctcagttactac
cgaaccatgcagtggcatgagaaccatgaccaagatgaggcagcagttgtgtcttctgtt
tcagatggcaacaatgtgattggaactgaagagaacagttttgaccgcaactatgtaaaa
aagaaattggagcacgggctttcacgaatatggcaggatgttcaattgaaagtgaaaact
tatcttctgggaacagatctgtctaacttcaaatacgatgacttcatatttgtacttgat
gttatcagcaggctgatgcaggttggagaagaattttgtggcagcaagtctgaagttttg
caagagtctatcagaaaacaaagcgttaactatttcaaaacttaccacagaacccgtctt
gaagaactaagaatgtttttggagaatgagacctgggaactttgtcctgttaaatcaagc
tttagtattttgcagcttcatgaatttaagttcatggagcagtcgcgttccccatccgtg
tcaccgagtaagcagcctgcctcagcagtttcgtcgacggtaacgctgtttgagcagtac
tgtaacggaggaaacccctttgaaattcaggctgacagcaaagatgatgagacagaagat
gtgttagcttccaatgggtatgaatcagatgaacaagaaaaaagtgcctatcaagagtat
gatagtgacagtgatgttcctgaagagttgaaaagagattatgtggatgagcagacagga
gatgccccgataaaaagtgtttctcgagaaactctgaggagcagaaagagatcagattat
aacctcaataaagtgaatgcacctattctaaccaacactacactgaatgtaataaggctt
gttgggaaatacatgcagatgatgaatattctgaaacctattgcgtttgatgtgatccac
ttcatgtcccagctctttgattactatctgtatgcagtctacacattttttggacgaaat
gacatgtttgaatcaacaggactgggcctcagtagcagcagattgcgcactacactgaac
agaatccaggagagtttgattgatctggaggtgtctgctgatccttcaggaactctcaca
gctgctgaagagagaaaagagaaggtgccaagcccacatcttagtcatcttgtagttctg
acatccggcaattcgctgtatggtttggcagagagagtggtggccacagaatccttggta
tttctggctgaacagtttgaatttcttcagcctcatcttgatgctgtgatgccagctgcc
aagaagccttttcttcagcagttctattctcagacagtgtcaactgccagtgaactacgt
aaaccagtttattggattgttgctgctaaagccattgattatgaacaaatgcttcttctc
atggctaatgtgaaatgggatgtgaaggaaatcatgtcacagcacaacgtatatgtagat
gctcttttaaaggaatttgaagaatttaacaggaggttgaatgatgtgtctaagagagtc
cgtattccattgccagtctccaacatcctgtgggagcactgcatacgcttggccaataga
actcttgtggaaggttatgccaatgtaaagaagtgcagcaatgaaggacgtgccttgatg
caactggattttcaacagttcttaatgaaactagaaaagttaacagacattaggcctatt
ccagataaagaatttgtggagacctacattaaagcatactacctgacagaaaatgacatg
gaatgctggataaaagaacatagggaatattccactaagcagttgaccaatctggtgaat
atttgtctgggcacctacatcaacaaaaaggcacgacagaagctgttagctaccattgat
gacatagacaggcctaagagataa
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