Hirundo rustica (Barn swallow): 120753705
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Entry
120753705 CDS
T09369
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120753705 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120753705 (PATL1)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120753705 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
120753705 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
120753705
NCBI-ProteinID:
XP_039922275
LinkDB
All DBs
Position
6:complement(60068164..60075113)
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AA seq
764 aa
AA seq
DB search
MFRYPSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEDKA
SSRREPDGPVGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRDPPQQPGGLNS
SIWDSSAVLRRIRGPLLAQEMPSVSVLDYALPQRPPQARDEERDPSERALPRRSSSPIIG
SPPVRAVPIGTPPKQAAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQLCNVPNS
SLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPKLLQGRV
GQMMSPAGGFRAFFGAPPAPPPSQLPHPPGPGSHLQNLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYERRYL
LSLEGERPALMGERKQKICDIYDNLRGKAPGQDRLSDDHFMQIMCIRKGKRLVARILPFL
APEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLGTVTSLVQQLTNLPQ
SAAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNAELMQDNQWTELMLMATRELL
RIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVQGIR
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgttccggtacccgtccctggaggactgcccgctggacgaggatgaagatgctttccag
gccctgggggaggaggatgaagacatcgaccagttcaacgatgacacctttggggccggg
gctgttgacgatgactggcaggaggcccacgagcggctggcggagctggaggacaaggcc
agctcgaggcgggagccggacggtcctgtggggaacgacggggacgttctgggcgatccc
gaggacgcgctggccgagcggctcacgcggctcgtcatcgacagcgagctggaggacccg
gccatcatgcaggccgtgcacaccagggatcccccgcagcagcctggagggctgaactcc
agcatctgggacagttcagccgtgctgcggcgcatccgggggccgctcctcgctcaggag
atgccgtcggtgtccgtgctggattacgccctgccccagaggcctccgcaggctcgggac
gaggagcgggatccctcggagcgagcgctgccccggcgctcctcgtcgcccatcatcggg
agccccccggtgcgggccgttcccatcggcacccccccgaaacaggccgccatccccaac
ttcaaccagcagatcctgtgccccaagcctgtccacatccgagctaccatgcagcagcgt
tatcccgctccctatggagagaggatgtcccccaaccagctctgcaatgttccgaattcc
tccctcctgggccacccgttcccccacagcgtctctcccgttctcacacacctgcagaga
gcccagctgctcggaggagcccaggccggccgaatgtcccccagccagtttgcccgggtg
tccgggctggtggggagcccgctgccctcggtgaatcccaagctgctgcagggcagagtt
gggcagatgatgtccccggccggagggttccgtgcctttttcggggctccccctgcccca
ccaccctcgcagctgccgcaccctccgggccccggatcccacctgcagaacctgaggccg
cagccccagatgttccggccggacacgacccatttgcacccccagcaccgccggctcctg
caccagcggcagcagcagaaccggaaccagcaccggagcctcaacggctccggcggggac
cgagggggccaccggagcagccatcaggagcagatccgtaaggatccctacgccaacctc
atgctgcagcgggaaaaggactgggtgtccaagatccagatgatgcagctgcagagcact
gatccctacctggatgattattattatcagaattacttccagaagctggagaagctggca
gcggccgaggaagtgcacggtgacggtcccaagaaggagcgcactaaactcatcacccct
caggtggccaagctggaacacacctacaagccagtgcagtttgagggctcgctgggaaag
ctcactgtctccagtgtcaacaacccccggaagatgatcgacgccgtggtgacatcccgc
agcgaggatgacgagacaaaggagaagcaggtccgggataagaggcgacagaccctcgtc
acgatcgagaagacgtacagcctcctcctggacgtggaggactacgagcgccgctacctc
ctgagcctggagggagagcggccagccctgatgggagagaggaagcagaagatctgtgac
atttacgacaatctgagggggaaggcacctgggcaggacaggctgagcgatgaccacttc
atgcagatcatgtgcatccggaaaggaaagcgcctggtggcccggatccttcccttcctg
gctccagagcaagcggctgacgtgctcatggccacggccaggaacctgcccttcctcatc
aagaaggatgctcaggatgaggtgcttccctgcctcttgaggcccttttcccacgtcctc
taccaccttcccttgggaacagtcaccagccttgtgcagcagctcacgaacctacctcag
agcgccgccgctcccaccaacctgcacctcactgctgtgctccaaaacaagttcggtctg
tccctgctgtacctggtcctgagccgaggggaggaattgcagagctcggacaccaacgca
gagctgatgcaggacaaccagtggacggagctgatgctgatggcgacccgggagctcctg
cggatccctcagggagccttggcaaagcccgtgtccatcccctccaacttgatctccctc
ttctctcgctacgttgaccagcagaagctgaacctgctggagacaaaattgcacttagtg
caggggatccggtag
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