Hirundo rustica (Barn swallow): 120753997
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Entry
120753997 CDS
T09369
Name
(RefSeq) homeobox protein SIX4
KO
K15615
homeobox protein SIX4
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hrt03000
]
120753997
Transcription factors [BR:
hrt03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain SINE
120753997
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SIX1_SD
Homeodomain
Homeobox_KN
HTH_TSHZ3
Motif
Other DBs
NCBI-GeneID:
120753997
NCBI-ProteinID:
XP_039922976
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Position
6:complement(5603314..5614593)
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AA seq
770 aa
AA seq
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MSSASPATDDIVIAVEIKEENVMEMLSEAPDGPAPPPPPAAAPFPMERAGSAAAGEEGAA
EQVLLHTELLARNHHAASSPSSSSSSSSSSQTPLAFSPDHVACVCEALQQGGNLDRLARF
LWSLPPSDLLRGNESLMKARALVAFHQGIYAELYSILESHNFDSSNHPLLQELWYKARYT
EAERARGRPLGAVDKYRLRRKYPLPRTIWDGEETVYCFKEKSRNALKELYKQNRYPSPAE
KRNLAKITGLSLTQVSNWFKNRRQRDRNPSETQSKSESDGNPSTEDESSKGREDLSPHPL
SSSSDGVTSLSLPGHMEPVYMQQLGNTKIALSSSGVLLNGNLMPASTSPVFLNGSSFLQG
PNSVILNGLSVGTSQTVTLNSPKTAASVVSNGVSITDILSSSSSEDVKDFKLLQASVPNA
TATFSPSNIPVTFPGLIPSSEVKREGVETAASQDGGSVVTFTAPVQINQYGIVQIPNSGT
NGQLLNGSIGFSSLQLPPVSVAASQGNVSVSPSTSDGGTFTTESSTVQQGKVFFSPLAPS
AVVYTVPNSGQAVGSVKQEGLERSLVFSQLMPVSQNTQLNVNMSSENISSAGLQSLASSL
VNVTPSHNFSLTPPTLLNAAELSSGISESQSMSSPVTSTSTVISISNTNYATLQNCPLIT
SQDLLSISTAQPVLGEIVSTSGERVSQPPAQVHQDFGREHRLVLQAVPDVKENFLPNSES
KSTGSLMMLDSKSKYVMSNMVDTVCEELETDKKELAKLQTVQMDEVMQDL
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcctcccccgccacggacgacatcgtgatcgcggtagagatcaaggaggaa
aatgtgatggaaatgctctccgaagcccccgacgggcccgcgccgccgccccctcccgcc
gctgccccgttccccatggagcgtgcaggctccgccgccgccggcgaggagggagccgcg
gaacaggtactgctccatacggaactcctggccaggaatcaccacgctgcctcctctccc
tcctcttcgtcttcctcctcctcctcctcgcagacccccctggctttctcgccggaccac
gtcgcctgcgtgtgcgaggcgctgcagcaaggtgggaacctggaccgcctggccaggttc
ctgtggtctttgcccccgagcgatctgctacgtggcaacgagagcttgatgaaagcccgg
gcgctggtggcttttcaccagggcatctacgccgagctgtacagcatcctggagagccac
aacttcgactcctccaaccacccgctgctgcaggagctctggtacaaggctcgctacacc
gaggcggagcgagcccggggcagacccttgggggcggtggacaagtacaggttgcggagg
aaataccccctgcccaggaccatctgggacggcgaggagacggtctactgcttcaaggag
aagtcccgcaacgcgctgaaggagctctacaagcagaaccgatacccctcgcccgccgag
aagcgcaacctggccaagatcaccgggctgtccctcacgcaggtcagcaactggttcaag
aaccgcaggcagcgggaccgcaacccttccgagacccagtccaaaagcgagtcagatggc
aaccctagcacagaagatgaatccagcaaggggcgtgaggatttatctccccatccactc
tccagctcctccgatggcgttaccagcctcagccttcccggccacatggagcctgtctac
atgcagcagcttggaaacactaaaatagccttgagctcgtctggtgtcttgttgaatggg
aacctcatgcctgccagtacctctcctgtcttcctcaatggtagctcgtttcttcaggga
cccaacagtgtcatactcaatggactcagcgtgggcacttcgcagactgttaccttaaat
tcgcccaaaaccgcggcgagcgttgtgagcaacggcgtgtccatcactgatatactgtcg
tcatcgtcgtcagaagatgtcaaggacttcaaactccttcaggcctcggtccccaatgcc
acagcaaccttcagccctagcaacatcccagtcactttcccaggattgataccgagctca
gaggtgaaaagggaaggcgtagaaactgctgcttcccaggatgggggctctgtagttact
tttactgctcctgtccaaataaaccagtatggcattgtccagatccccaattcaggaaca
aatggccagctgctgaacggaagcattggtttttcttctctgcagctgcctccagtttct
gtggcagcttcacaaggtaatgtttcagtaagccccagcacatccgatggaggaactttt
acgaccgaatcttcaaccgtgcagcaaggaaaggttttcttcagcccccttgctccaagt
gcagtggtttatacagttcccaattcgggccaggcagtaggatctgtcaagcaggaagga
ctggaaagaagcctggtgttttctcagttgatgccagtcagtcagaacacgcagctgaac
gtcaacatgtcttctgaaaatatatccagcgcaggactccagtccctggcctcctcgtta
gtgaatgtaacgccctcacataatttttccctcacaccaccaactcttttaaatgctgca
gaactgagctctggtatttcggaaagccagtccatgtcttcacccgtgaccagtacctct
acagtgatatctatcagcaacactaactatgcaacccttcagaactgtcccctcatcacc
agtcaggatctgttgtccatttccacagcgcagcccgtgcttggagaaatagtttcgacc
agtggagagcgtgtcagccagccccctgcacaggtgcaccaggatttcggcagagagcac
aggttggttctgcaagccgtacccgatgtcaaagagaatttcttacctaattctgagagt
aagtcaactggcagtttaatgatgctggattccaaatctaagtatgttatgagtaacatg
gttgacacggtgtgtgaagaactggaaacggacaaaaaagagcttgccaaactgcagaca
gttcagatggatgaagttatgcaagacttgtaa
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