Hirundo rustica (Barn swallow): 120754910
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Entry
120754910 CDS
T09369
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hrt04040
]
120754910
Ion channels [BR:
hrt04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
120754910
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
IQ
FraC
Lustrin_cystein
New_glue
ATP-synt_B
Motif
Other DBs
NCBI-GeneID:
120754910
NCBI-ProteinID:
XP_058277261
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Position
7:complement(18375138..18468358)
Genome browser
AA seq
2013 aa
AA seq
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MEQSVLVPPGPDSFQYFTRESLAAIEQRIAAEKAKNPKQDRKDDDENGPKPNSDLEAGKT
LPFIYGDIPPGMVSEPLEDMDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCLQWPPENFTLETNITSQLNSTIG
ENGTLVNSTVTPFDWKGYIEDESHFYFLEGQNDALLCGNSSDAGQCPEGYTCVKAGRNPN
YGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLIL
AVVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQAAAVAAAAVTASAESREPSA
GGEAGGLSESSSDASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRK
GFRLSIEGNRLTYEKKYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFAD
DEHSTFEDNDSRRDSLFVPRRHGERRNSNISQASRSSRMLAVFPVNGKMHSTVDCNGVVS
LVGGPSVPTSPVGQLLPEVIIDKPATDDNGTTTEPEMRKRISGSFHISMDFLEDPALRER
AMSIASILTNTVEELEESRQKCPPCWYKFANIFLIWDCSPHWLKVKHIVNLVVMDPFVDL
AITICIVLNTLFMAMEHYPMTDEFNNVLSVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGW
NIFDGFIVTLSLVELGLADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGN
LTLVLAIIVFIFAVVGMQLFGKNYKECVCKIASDCVLPRWHMQDFFHSFLIVFRVLCGEW
IETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAVTDDDNEMNNL
QIAVARMQKGIDYVKRKAREFIQKAFVKKQKALDEIKPLEDLNNKNSCISNHTTVELSKD
HDYVKDANGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEEF
SSESDLEESKEKLNSSSSSEGSTVDIGLPAEEQPEAEPEEAQEPEACFTEGCVRRFKCCQ
VSIEEGRGKQWWNLRKTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLE
YADKVFTYIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIK
SLRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKF
YYCVNTTTDERFEVDQINNFSQCEELIKNNQSARWKNVKVNFDNVGFGYLSLLQVATFKG
WMDIMYAAIDSRDVLQQPKYEDNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKF
GGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTQQVFDISIMILICL
NMVTMMVETDDQSKEMENILYWINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVI
LSIVGMFLAEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNI
GLLLFLVMFIYAIFGMSNFAYVKREAGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPI
LNSGEPDCDPNKAHPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFGVAT
EESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSDFAAALEPPLHLPKPNKVQLIAMD
LPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEDRFMASNPSKASYEPITTTLKRK
QEEVSAVIIQRAYRRHLLKRTVKQASFIYNKNKTEGGAGQGLKDEILIDKLNENSFTEKT
DITASTAVCPPSYDRVMRPVKEKHEKEDKDGQK
NT seq
6042 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtcagtgcttgtaccaccaggaccagacagcttccaatacttcactagagag
tctcttgcagctattgaacaacgcattgctgcagaaaaagctaagaatcctaaacaagat
cgtaaagacgatgatgaaaatggcccaaaaccaaacagtgatttggaggcaggaaaaacg
ctcccctttatatacggtgacatacctccaggaatggtgtctgagcccttggaagacatg
gacccatattacatcaataaaaaaacctttatagtattgaataaagggaaggcaatcttc
cgattcagtgccacctccgccctgtacattttaacacccttcaaccctcttagaaaaata
gcaattaaaattttggtacattcattattcagcatgcttatcatgtgcactattttgacc
aactgcgtatttatgaccatgagtaaccctccagactggacaaagaatgtagagtatacg
ttcactggcatttacacatttgagtcactaataaaaatcattgcaaggggcttttgctta
gaagattttacttttcttcgagatccgtggaactggcttgacttcactgtcattaccttt
gcgtatgtaacagaatttgtaaacctaggcaatgtttcagctcttcgaactttcagagta
ttgagagctttgaaaactatttctgtaattccaggcctgaagactatagtgggagccctg
attcagtctgtgaagaagctctcggatgtgatgatcctgactgtgttttgtctgagtgta
tttgcactgatagggctgcagctgttcatgggcaacctgaggaataaatgcctgcagtgg
cctccagaaaattttactttggaaacaaatattacttcccagctgaacagcacaataggt
gaaaatggtacattggttaattcaacagtgactccgtttgactggaagggatacattgag
gatgaaagtcatttttattttctggaagggcaaaacgatgctctgctttgtggaaatagc
tctgatgctgggcagtgcccagaaggatatacttgcgtgaaagctggcagaaaccccaac
tatgggtacacaagttttgacactttcagctgggctttcctgtcactgtttcggctaatg
actcaggacttctgggaaaacctttatcaattgactcttcgtgctgctgggaagacatat
atgatattttttgtcctggtgatttttctgggctctttctatctgataaacctgatcctg
gctgtggttgccatggcctatgaagaacagaatcaagcaaccctggaagaagcagagcag
aaagaggcagaatttcagcagatgctggaacaactgaagaagcaacaagaagcagcacag
gcagcagcagtggcagcagcagcagtaacagcatctgcagagtccagggagcccagtgct
ggaggagaagcaggagggctctcagaaagctcctcagacgcatcaaaattgagctcaaag
agtgcaaaagagaggagaaatagaaggaaaaaaaggaaacagaaagaacagtctggagga
gaagaaaaagatgaagatgaatttcacaagtctgaatcagaagacagcatcagaaggaaa
ggtttccgattgtctattgaaggcaatagactgacatatgaaaagaagtattcttctcca
caccagtctttgctgagtattcgtggctccctgttttccccaaggcgcaacagcagaaca
agtcttttcagcttcagaggtcgagcaaaggatgtaggatcagaaaatgactttgctgat
gatgagcacagcacttttgaagacaacgacagcagaagagattctctcttcgtgccgcgc
agacacggtgaacggcgcaacagtaacattagccaggccagcaggtcatccaggatgctg
gcagtgtttccagtgaatgggaagatgcacagcaccgtggattgcaatggggtggtttcc
ctggttggtggaccatctgttcctacatcgcctgttggacagcttctgccagaggtgata
atagataaaccagctactgatgacaatggcaccacgacggaaccagaaatgaggaagaga
atatcaggttcttttcacatttctatggacttcctggaagatccagctttaagagaaaga
gccatgagtattgctagcatcctcacaaacactgtggaagaacttgaagaatcgagacag
aaatgcccgccatgttggtataaatttgcaaacattttcttgatctgggactgcagtcca
cattggttaaaagttaagcatattgtcaacttagtggtaatggacccatttgttgacctg
gctattacaatttgcattgttttaaatacactctttatggctatggaacattatccgatg
accgacgaattcaataatgtactttcagttggaaatctggtcttcactggaatcttcaca
gcagaaatgtttctcaagataattgcaatggatccttactattatttccaggaaggatgg
aatatttttgatggttttattgtgacccttagcttggttgaacttggtcttgcagatgtg
gaaggactgtcagttcttcgatcattcagattgttacgagttttcaaactggcaaaatct
tggccaaccctaaatatgctgataaaaatcattggtaactccgtgggagctttggggaat
ctgaccctggtgctggccatcatcgtgttcatttttgctgtggttgggatgcagctgttt
gggaaaaactacaaggaatgcgtctgcaaaatcgcaagtgactgcgtgcttcctcgctgg
cacatgcaagactttttccactctttcctgattgtattccgagtgctgtgtggagaatgg
atcgaaaccatgtgggactgcatggaggttgcaggccaagctatgtgccttacagtcttc
atgatggtcatggtgattggaaacctagtggtactgaacctatttttggccttgcttttg
agctcatttagtgcagacaaccttgccgtgacagatgatgataacgaaatgaacaatctc
cagattgctgtggcaagaatgcagaaaggcatagattatgtaaaaagaaaagcacgtgaa
ttcatccaaaaagcctttgttaaaaagcagaaagctttagatgaaatcaagccacttgaa
gatttaaacaacaaaaatagctgtatttctaaccatacaactgtggaactaagcaaggac
catgactatgttaaagatgcaaatggaaccaccagtggtataggcacaggcagcagtgtg
gaaaaatacataattgatgagagtgattacatgtcattcataaacaacccaagtctcact
gtgacagtgcccattgctgtgggtgaatccgactttgaaaatctaaacacagaagaattt
agtagtgaatcagacctggaagaaagcaaagagaagttaaattcatctagttcatctgaa
ggcagcacagttgatattggacttcctgcagaggaacaaccagaagctgaacctgaagaa
gcccaggagccagaggcctgcttcacagaaggctgtgtaaggaggttcaagtgctgtcaa
gtaagtatagaagaagggagaggaaagcagtggtggaaccttagaaaaacctgcttcagg
attgttgaacacaactggtttgagactttcattgtcttcatgattctcctcagtagtgga
gctctggcttttgaagacatatatattgaacaacgtaaaactatcaagaccatgctggaa
tacgctgacaaggtcttcacttacatcttcattctggaaatgctgctgaagtgggtggcc
tatggctaccaaacatattttaccaatgcctggtgctggctggacttcctgattgttgat
gtctctttggttagcttaacagcaaatgcattgggttactctgaacttggtgccattaag
tcccttaggacactaagagctttgagacctctaagagctttgtcacgatttgaaggcatg
agggtggttgtgaatgcccttttaggagcaattccatccatcatgaacgtgcttctcgtt
tgtcttatattctggctaattttcagcatcatgggagtaaatctgtttgctgggaagttc
tactactgtgttaacaccacaactgatgaaaggtttgaagtcgaccaaatcaacaatttt
agtcagtgcgaggaactcataaaaaacaatcaaagtgcccgatggaaaaacgtgaaagta
aactttgataatgtaggatttgggtatctttctttacttcaagtagctacatttaaaggc
tggatggatattatgtatgcagctattgactcaagagatgtgttacagcaacccaagtat
gaagacaacttgtacatgtacttgtattttgtaatctttataatttttgggtcttttttc
actctgaatttgttcattggtgtcattattgacaacttcaatcagcaaaaaaagaagttt
ggaggtcaagacatatttatgacagaagagcagaagaaatactacaatgcaatgaaaaag
cttggatccaaaaaaccacaaaaacctataccaagaccagggaataaattccaaggcatg
gtctttgattttgtgacacagcaagtatttgacatcagcatcatgattcttatttgtctt
aacatggttaccatgatggtagaaactgatgaccagagcaaagaaatggaaaatatttta
tactggataaacctcgtgttcattgtccttttcactggagaatgtgtcctgaaattaatt
tcacttcgccattactacttcactataggctggaacatttttgattttgtggttgtcatt
ctctctatagtaggtatgttcttagctgagatgattgagaagtactttgtatctcccaca
ctattcagagtcatccggcttgccagaatcggacgaatcctgcgcctcattaaaggcgct
aagggaatccgcactctgctttttgctttgatgatgtctcttcctgctttgttcaacatt
gggctgctgctcttcctggtcatgttcatctacgccatatttggcatgtccaactttgcc
tatgtcaagagggaagctgggattgatgacatgttcaactttgagacgtttggcaacagc
atgatctgcctgtttcagatcaccacatccgctggctgggacggtttgctcgccccaatt
ctgaacagtggggagccagactgtgaccctaacaaggctcatccagggagctctgtgaaa
ggtgactgtggcaacccttctgttgggattttcttctttgtcagctacattatcatatcc
ttcctggtggtggtgaacatgtacattgctgtgattttggagaacttcggtgttgcaact
gaagaaagtgctgaacccttgagcgaggatgactttgagatgttctatgaagtctgggag
aaatttgatcctgatgcaacacaattcatggaatttgagaaactgtccgattttgcagca
gcacttgagcctcctcttcatctacccaaaccaaacaaggtgcagcttattgcaatggat
ctgcccatggtgagcggtgacagaattcactgccttgacatcttgtttgctttcacaaag
cgtgtattgggggaaagtggggagatggatgccctcagaatacagatggaagatcggttt
atggcatccaatccctctaaagcttcctatgaaccaattacaaccacactgaagcgaaag
caggaggaggtgtctgctgtcatcattcagcgtgcttacagacgtcaccttttaaaacga
acagtaaaacaagcttcctttatctataacaaaaataaaactgaaggtggggctggtcag
ggtctgaaagatgaaatccttattgacaagttaaatgagaactcatttacagagaaaaca
gatataactgcatcaacagcagtttgtccaccttcttatgatcgtgtaatgaggccggtc
aaagaaaaacatgaaaaggaagataaagatggtcagaaataa
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