Hirundo rustica (Barn swallow): 120755060
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Entry
120755060 CDS
T09369
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrt04147
]
120755060 (COL18A1)
00535 Proteoglycans [BR:
hrt00535
]
120755060 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
hrt00536
]
120755060 (COL18A1)
Exosome [BR:
hrt04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120755060 (COL18A1)
Proteoglycans [BR:
hrt00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
120755060 (COL18A1)
Glycosaminoglycan binding proteins [BR:
hrt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120755060 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
120755060
NCBI-ProteinID:
XP_039925504
LinkDB
All DBs
Position
7:complement(34972921..35011939)
Genome browser
AA seq
1668 aa
AA seq
DB search
MAPPRLRFLLLLACCFSCSETQLLDWVWDSTKTTGSPAAPSEGILASDPPASEAAAAPSP
SPGTWGGEVLGNVSTPPWQESDPATAAPVGGGTAAKTTEQWDRNATRLLESTARPSVAPP
RSMSPAPGQQASSTTDDPQLLGTGTHKDPQLLRMRTTKDTQFLGPVTSKDPQLLGTRTTE
NLQLLGSGSTENPQLLRMEITEDSPLLGSGTTEDLQLLGLGTTEDQQLLGTMSTTDLQLL
ETGHTEDPQLPGMGTTENPQLLAMRNTKDTQLLRTVTTENPELLGNTENPLLLWTVTPED
PELLRTETPTAMETQVSLQRPVGPQPESLSAEVSLLELIGDPPTEEIHRIYGPDNNPGYV
FGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELQ
AGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEEEVVLYLDCEEHERVHFE
RSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEEDDAEVSGDF
GSGMEGGQQPSSGKVEGVPGLVNAVPVTSPPVAGSSGPRSGGGSPQQAERTRAEETLRVS
TGGTGWKGEKGEKGERGLKGDSGTGGIVGPGSVKGQKGEKGDLGVKGSAGFGYPGSKGQK
GEPGDPGRPGTLSRHADGSVVEQVTGPPGPPGKDGFPGRDGEPGDPGEDGKPGEMGPPGF
PGMPGEPGLKGEKGDPGLGPRGPPGPPGPPGPPGPSSKNDKLTFIDMEGSGFGSDLESLR
GPRGPPGPPGPPGVPGLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPPGPAGPQGPPGRDG
EAGQPGPKGERGDVGDLGLPGLPGPKGSKGEPGPAGPPGEMGLAGLPGPIGPQGQPGPPG
PPGPPGPGYEAGFGDMEGSGLSFTPGPPGPAGPQGVLGLPGMKGEVGSPGQPGLPGPKGD
AGMPGVDGRPGLEGFPGPQGPKGDKGSAGEKGERGQDGVGLPGPPGPPGPPGQVITVSGE
DKSLVAFPGPEGRPGHAGFPGPVGPKGDQGSTGPQGAPGLKGEKGEPGVIISPDGTVVTA
KVKGEKGEPGLRGPMGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVLGSRGP
PGPPGPPGPPGPPGSIVYNNGNTFSDSSHPAFPGFHRFPGQKGEKGDTGPPGPPGQLPYD
VSHFTTSLRGDKGDAGPKGEKGEPGSTPLYGPGVSGLPGPPGPQGYPGLPGPKGDSIVGP
PGPPGPQGPPGVGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPPGTSGM
SLGLRAMPTYQAMLSAAHELPEGSLVFLTSRQELYVRLRGGFRRVLLEEHNLIPSSALDN
EVYDKPPTLHYASPQPRGPLHPLRNHVPPATARPWHGDEVVANQHRLPEKPLLHHQQELI
NGYYVHHRPDPAPVAAHVHQDFQPAVSATCWPRGADGGGQRRVPQAPVISSWQLHLVALN
TPQSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIVRRADRTDVPIVNLRD
EVLFNNWEALFMGSGAPLRAGTRILSFDGRDVLQDAGWPQKNVWHGSDAKGRRLPESYCE
TWRTEERAVTGQASSLASGKLLEQAASSCQHAFIVLCIENSFMTAAKK
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atggccccacctcgattgaggtttctcctcctcctggcttgctgcttctcctgctctgaa
acacagctcctggactgggtttgggacagcacgaaaaccacaggaagcccagcagcaccc
agcgagggaatcctggcgtcggacccaccggcctcagaggcagctgcggctcccagccca
tccccagggacgtggggtggcgaggtgctggggaatgtcagcaccccgccgtggcaggag
tcagatcctgctacagcagcacctgtgggtgggggaactgcagccaaaaccacggagcag
tgggacaggaatgccacaaggctgctggagagcacggcacggccaagcgtcgctcctccc
cgcagcatgtcacctgccccaggacagcaagccagcagcaccaccgacgatccccagctc
ctggggacagggacccacaaggatccgcagctcctgaggatgaggaccaccaaagacacc
cagttcctggggccagtgacctccaaggacccgcagctcctggggacaaggactactgag
aatctgcagctgctggggtcaggaagcactgaaaacccacagctcctgaggatggagatc
acggaggactccccgctcctggggtcagggactactgaggacctgcagctgctggggttg
ggcaccactgaggaccaacagctcctagggacgatgagtaccacagacctgcagctcctg
gaaacagggcacaccgaggacccacagctcccgggcatggggaccactgagaatccgcag
ctcctggcgatgaggaacaccaaggacacacagctcctgaggacagtgaccactgagaac
ccagagctcctggggaacactgagaacccactgctcctgtggacggtgacccctgaggac
ccagagctcctgaggacagaaactcctacagcaatggagacacaggtgtccttgcagaga
ccagtgggtccccagccagagagcctgagtgccgaggtcagcctgctggagctgatcggg
gacccaccgacggaggaaatccacagaatttatggtcccgacaacaaccctggctatgtc
ttcggtcccaacgccaacacgggccaggtggcccggtaccacctgccgagccctttctac
cgggacttctcgctgctcttccacatccagcccaccacgccccgggctggcgtgctcttt
gctgtcacggactcctcgcagagcatcatctacgtgggcgtcaagctctcagagctgcag
gcgggccagcagcagatcatcttctactacacggaaccgggctcgcccagctcctaccca
gctgccaccttcaccgtgcccaccctgctcaaccagtggacgcgcttcgccatcagtgtg
gaggaggaggaagttgtcctctacctggattgtgaggagcacgagcgcgtccatttcgag
cgctccccggacgagatggagctggaggagggctccgggctctttgttgctcaggctgga
ggggcggacccggataagtaccagggggtgattgcagatttgaagctgcgaggggacccg
cgggcggccgagcgccagtgcgaggaagaggaggacgatgcagaggtgtctggggatttt
ggcagcggtatggaaggtggacagcagccctcctcgggcaaggtcgagggtgtcccaggg
ctggtgaatgctgtccccgtgacctccccccccgtggcggggagcagtggcccgaggagc
ggcggggggtccccacagcaagctgagaggaccagggcggaggagacgctgcgggtctcc
acgggaggcactggctggaaaggcgaaaagggggagaagggggaacgtggcttgaaagga
gactcagggactggtggcatcgtagggccaggcagtgtcaagggtcaaaagggggaaaaa
ggagacttgggagtcaagggcagtgcaggatttggctatcctggctctaagggccaaaaa
ggagaaccaggtgaccctggacgccccgggaccctctctcggcacgctgatggctcggtg
gtggagcaggtcaccggccccccagggccgccggggaaggacggattccctggcagggat
ggtgagcctggagatcctggcgaggatggcaaaccgggtgaaatggggcccccggggttc
cccgggatgccgggggagccgggcctgaagggggagaagggtgacccaggcctggggccg
agggggccccctggaccacctgggcctccaggaccgccgggaccctcctccaagaatgac
aagctgaccttcatcgacatggagggctccggcttcggcagtgacttggagagcctgcgg
ggtccacgagggccccctggtcccccagggccacctggcgtgcccggtttgccaggggag
ccaggacggtttgggatgaaccgcacagacctgccgggaccaccagggctgccaggcagg
gacgggatccccgggcccccagggccagcgggtcctcagggtcctccaggaagagacggg
gaggctgggcagccggggcccaaaggagagcggggtgatgtaggtgacctcggcctccct
ggcctgccgggacccaagggcagcaaaggagaaccaggaccagcaggaccgccaggagaa
atgggcttagctggccttcctgggcccattggaccgcaagggcagccagggccccctggc
cccccaggaccaccagggccaggctacgaggctggatttggtgacatggagggctcgggg
ctgtcattcacccctggaccacctggacctgcaggaccacagggtgtgctgggactgccg
gggatgaagggagaggtcggcagccccggacagcctggcttgccgggaccgaagggagat
gctggcatgcctggtgtggatggccgccctggcctggagggtttccctggaccacaggga
cccaaaggtgacaaaggcagcgccggtgagaagggagagcgaggccaagatggagtgggg
ctgcctggcccccctggcccgcctggtccccctggacaggtcatcactgtctccggtgaa
gataagtctttggtggcttttcccggtccagagggcagaccaggccatgctggcttcccg
ggtccagtgggaccgaaaggagaccaggggtcaactggtccccagggtgccccagggttg
aagggggagaagggggagcccggtgtcatcatcagccctgatgggactgtggtcactgcc
aaggtgaaaggagaaaagggggagccagggctgcggggcccgatgggaccatcgggtcct
ccaggacgagcagggatgaagggagagatcggctttccaggcagacctggacgtcctggc
atgaacgggctgaagggtgagaagggtgaccctgcggatgtgctgggctcgcggggtccc
ccaggccccccaggaccccctgggcctcctgggccacctggcagcatagtctacaacaac
ggcaataccttcagtgactccagccatccagcgttccctggcttccatcggttcccagga
caaaagggagagaaaggtgacactggacccccaggacccccaggccagctcccctatgat
gtgagtcacttcactactagcctgcggggggacaagggggatgcaggtcccaagggtgag
aagggcgagccgggcagcaccccactctacggtcctggggtctctggacttccagggcct
ccagggccccagggatatcctgggctgccgggtcccaagggggacagtattgttgggcca
ccggggcctccaggacctcaaggtccccctggtgtgggatacgaggggaggcagggaccc
cctggccctcctggtccacctgggccaccttccttcccaggtccccacagacaagctgtc
agcatccctggacccccaggaccaccaggaccccccggacctccaggcactagcgggatg
tccctggggctccgggccatgcccacgtaccaggcaatgctgagcgccgcacatgagctg
cccgagggcagcctcgtcttcctgaccagccggcaggagctctatgtccgcctgcgtggg
ggcttccgcagggtgctgctggaggagcacaacctgatccccagttcggctctggacaac
gaggtgtacgacaagccacccaccctccactacgccagcccccagccccgtgggcccctc
cacccgctccgcaaccacgtccccccggccaccgcccgtccctggcacggggacgaggtg
gtggccaaccagcaccgcctgcctgagaagcccctgctgcaccaccagcaagagctcatc
aatgggtactatgtccaccaccggccagatcccgcccctgtggccgcccacgtgcaccag
gacttccagcctgccgtgagtgccacgtgctggccaaggggagctgatggcggtggccaa
agacgtgtccctcaagcccctgtcatctcctcttggcagctccacctggtggccctgaac
accccgcagagcggcggcatgcgcggcatccggggcgccgatttccagtgcttccagcaa
gcccggcaggttgggctggccggcaccttccgcgccttcctgtcctcgcgcctgcaggat
ctctacagcatcgtgcgcagggctgaccgcaccgacgtccccatcgtcaacctccgggat
gaagtgctcttcaataactgggaagcccttttcatgggcagtggggccccgctgcgagcc
ggcactcgcatcctctcctttgatggccgggatgtcctgcaggatgcgggatggccacag
aagaatgtctggcacggctcagacgccaagggccggcgcctgcccgagagctactgcgag
acatggcggacagaggagcgcgcagtcactggccaggcttcctccctggcctctggaaaa
ctgctggagcaggcggccagcagctgccagcatgccttcattgtcctctgcatcgagaac
agcttcatgactgccgccaaaaagtga
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integrated database retrieval system
