KEGG   Hirundo rustica (Barn swallow): 120755061
Entry
120755061         CDS       T09369                                 
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
hrt  Hirundo rustica (Barn swallow)
Pathway
hrt04510  Focal adhesion
hrt04512  ECM-receptor interaction
hrt04518  Integrin signaling
hrt04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:hrt00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    120755061 (COL6A1)
   04518 Integrin signaling
    120755061 (COL6A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    120755061 (COL6A1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    120755061 (COL6A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:hrt04147]
    120755061 (COL6A1)
   00536 Glycosaminoglycan binding proteins [BR:hrt00536]
    120755061 (COL6A1)
Exosome [BR:hrt04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   120755061 (COL6A1)
Glycosaminoglycan binding proteins [BR:hrt00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   120755061 (COL6A1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   120755061 (COL6A1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 vWA-TerF-like DUF5507
Other DBs
NCBI-GeneID: 120755061
NCBI-ProteinID: XP_039925507
LinkDB
Position
7:complement(34880788..34903708)
AA seq 1023 aa
MRLRDFLLTLLLPAGFLLWGSCAQRPEIISQVSSTEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTQRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQSELKNR
VSAVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTREIDVEETINTIIDM
IKLNTEQLCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGMKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGAPGNRGEPGPAGETGDEGALGED
GPPGERGSSGERGPPGSPGDRGPRGQPGEPGPPGDQGREGPLGPPGDQGEPGPTGPKGYR
GDDGPPGSEGPKGLPGAPGLPGDPGLMGEKGEDGPPGNGTIGFTGAPGQPGDRGNPGING
TKGYVGPKGDEGEAGDPGNDNLTPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGPADITMLVDSSTSVG
SKNFETTKKFVKRLAGRFLEASKPADDSVRISVVQYSGRNQHKVEAQFQYNYTVIAKAID
NMEFMNDATDVNSALQFITELYRRSARTSAKKRVLVFSDGHSQGITARAIERAVQDAQKA
DIEIYVLAVGSHANEPNIRVLVTGKSADYDVAYGERHLFRVPDYSSLLRGVFYQTVSRKI
AVD
NT seq 3072 nt   +upstreamnt  +downstreamnt
atgaggctgcgagactttttgctcactctgctgctcccggctggcttcctgttgtggggc
tcatgtgctcagcgcccagaaatcatcagccaagtctcgagcacagaagactgccctgtg
gacctgttcttcgtcctggacacctcggagagcgttgccctgagggtgaagccctttggc
gacctggttacccaagtgaaagatttcaccaaccggttcattgataagctgactcagagg
tactaccgctgcgaccgcaatctggtgtggaacgcaggagcgctgcactacagcgatgag
gtggtgctcatcaagagcctcacgccgatgcccagcgggcagagcgagctgaagaaccgc
gtgtcggccgtcaactacatcgggaagggcacctacaccgactgcgccataaagcgcggc
atcgaggagctgctcattggtggctcccatcacaaggagaataaatacctgattgtggtg
actgatggacatcccttggaaggttacaaggagccctgcggaggcttggatgatgctgcc
aatgaagccaaactcctggggatcaaagtgttctccgtcgccatctcccccaaccacttg
gatcagcggctgaacatcatcgccacagaccacgcctaccgccgcaacttcaccgccacc
agcctgaagcccacccgggagatcgatgtggaggagaccatcaacaccatcatcgacatg
attaaacttaacacagagcaattgtgctgctccttcgagtgccagcctccccgagggccc
cccggacctcctggtgaccctggccatgagggagaacgaggcaagccaggtcttcccggc
cagaaaggagaggctggagacccaggcaggccaggagacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagccgaggagaaaagggctcaagaggagccaaaggagcc
aagggtgagaaaggcaggcgtggaatcgatggcattgatggcatgaagggtgaagctgga
taccccggattacctggctgcaaaggctcacctggattcgacggagctcaaggcccgccc
ggaccaaagggagatcctggtgcttttggacccaagggagcaaagggggagcctgggaat
gatggaaagcctggccgacaggggattcctggcaaccctggagagaagggtgctcctggg
aaccggggtgagcctggacctgcaggagagactggtgacgagggtgctctaggtgaggat
ggtcctcctggagaacggggcagcagtggagagagaggacctccgggctcaccgggtgac
cgcgggccaagaggacagccgggagagcctggaccacctggtgaccaagggcgggaaggg
cccctcggaccacctggagaccagggtgagcccggacccacaggacccaaaggctacagg
ggagatgatggcccccctggcagtgagggcccaaagggattgcctggagcacctggcctg
cctggagaccctgggctgatgggagaaaagggggaggacggtcctcctgggaatggcaca
attggattcacaggtgccccagggcagccaggagacagaggcaaccctggcattaatgga
acaaagggctatgttggacctaaaggtgatgaaggggaagctggcgaccctggcaatgat
aacctgacccctgggcccagtggcatcaaaggagcaaaaggccacaggggacgtgaaggt
cccccgggaccaccaggacccgtggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaaaatgtgctcttgctgcgagtgcacctgtggtcccgtcgacctcttgttt
gtgttggacagctcagagagcatcggcctgcagaacttccagattgccaaggacttcatc
atcaaagtaatcgaccgcctgagcaaggacgagcgagtcaagtttgaagctggggagtcc
cgtgtgggcgttgtgcagtacagccatgacaacacgcaggagttggtggccatgggggat
gccaacatcgacaacatcggggcactcaagcaggcagtcaagaacctgcagtggattgct
gggggcacctacactggggaggccttgcagttcaccaaggacaacctgctgcggaggttc
acgtctgacaagcgtgtggccatcgtcatcacagacgggcgctccgacaccctgagggac
cccacccctctcaattccctgtgcgatgtcaccccggttgtttcccttgggattggtgac
attttccggaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagacca
accaggccaggactgtccattcaaagggacaactatgctgagctcctggatgacaccttc
ttgcagaacatcacctcgtacgtctgtcaagagaaaaaatgtcccgactacacttgccca
atcaccttcactgggccagcagacatcacaatgctggtggacagctccaccagcgtggga
agcaagaactttgagaccaccaagaagtttgtgaagcggctggcggggcggtttctggag
gccagcaaacccgccgacgactctgtgcgcatctcggtggtgcagtacagtggccggaac
cagcataaagtggaagctcagttccagtacaactacacagtcattgccaaggccatcgac
aacatggagttcatgaatgatgccacggatgtgaactctgctctgcagttcatcacggag
ctgtaccggcgctctgcccgcacctcagccaagaagagggtgttggtgttttctgacggt
cactcccaagggatcactgccagggccatcgagagggctgtgcaggatgcacagaaggct
gacattgagatctatgtgctggcagtgggcagccacgctaacgagccaaacatccgtgtc
ctggtcacggggaagagcgcggattacgacgtggcctacggggagcggcaccttttccgc
gtgcccgactacagctctctgctgcgtggtgtcttctaccaaactgtctcccggaagata
gctgttgactga

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