Hirundo rustica (Barn swallow): 120755429
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Entry
120755429 CDS
T09369
Symbol
PMS1
Name
(RefSeq) PMS1 protein homolog 1 isoform X1
KO
K10864
DNA mismatch repair protein PMS1
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrt03400
]
120755429 (PMS1)
DNA repair and recombination proteins [BR:
hrt03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120755429 (PMS1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_mis_repair
HMG_box
HATPase_c_3
HMG_box_2
HATPase_c
HMG_WDHD1
CHDNT
Motif
Other DBs
NCBI-GeneID:
120755429
NCBI-ProteinID:
XP_039926267
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All DBs
Position
7:complement(30673424..30717172)
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AA seq
933 aa
AA seq
DB search
MKQLPGETVRLLSSSQVITSVVSVVKELIENSLDASATNIDIKLENYGFGKIEVRDNGSG
IKVDDVPVMAIKHYTSKISSSEDLERLTTYGFRGEALGSICSVSEVLVTTKTAADDFSIQ
YALDSNGHVTSKKPSHLGQGTTVTVLNLFRNFPVRKQFYSTNRKCKEELKKVQELLTAYG
IIKPDLRITLTHNKAVIWQKTRVSDHKMACMSVLGTAVMSSMVPFQHCCEYPEINLFGFL
PKAESDSSLTSLSSSEKSFIFINNRPVLQKEILKLIRQYYSQVTQKDCTRLYPVFFLSIT
VPASAVDVNVTPDKTQVLLHYKESVLLAVENVLKSLYGPLPAAVPGESNKTDVTSEDMFV
HRTDQADVAVNEMGPSGNDELHAHTSFLSLSSDVQNCQAGKNAEICLNHQTFSGDNVHSR
LDKREVSKSDAFPDSSLNLLREEEQNGQNMADIESKSVPVDSESKKANEHLLSSDNIDKI
DKNEETLVPKDLPEISADSWSMGNAFKDSLGDKLEPVKILIPEVGETTNKQNEYTGEKSG
DPQSSNQSIKKKNVISEKFGQVTAYDLINSRIIKKPKSAFEFFTHECRPKLINDNPKTSM
NDILLTVKEQWKNLSEEEKQNYEIQATKDRERYNREVKKANAQPMHRAAKEAEKHKPKLK
SSASDQQKLDKIFHDQIEKKGKLEQPVKIVTVPFSLSSCRRHLQRQERNVSDEHALFLIR
RQSFPDVWILATEKNVKLLNPYRLEEALLCKRLLVNHKLPVEKLDNPVVLTDSLIGGSQY
MAALHKMQKNYQSFHGSGYLSDPRLVANGFQIKVTEGVSATESHLEIEGMANCLPYYGIS
DLKEILNAVVNRNAKEVYECRPLKVINYLEGEAVRLARQLPLHLSKEDVQNTIYRMKQQL
GKENKGCVHGRPFFHHLTDIPEADKHNSMEIIQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagctgcctggagagacagttcgtctcctttcaagttctcaggtgattacttca
gttgtcagtgtggtgaaggagttgatagaaaattccttggatgccagtgctacaaacatt
gatattaaactggagaattacgggtttggcaaaatagaagtaagagacaatggcagtgga
atcaaggttgatgatgttccagttatggcaattaaacactacacctcaaaaatcagctct
tctgaggaccttgaaaggctgacaacgtacggtttccgtggggaagctttgggatccatt
tgcagcgtttcagaggttttggtgacaacaaagacagctgctgatgatttcagcattcag
tatgctttggatagcaatgggcatgtaacctctaaaaagccttcccaccttgggcaaggt
actacggtaacagtcctaaatttgtttaggaattttcctgtgagaaagcagttttactca
acaaacagaaaatgtaaggaagaactgaaaaaagtccaggagctactgacagcatatggt
atcataaaaccagacctgaggataacattaacacataataaggcagttatttggcagaag
accagggtatcagatcacaaaatggcctgtatgtcagttctgggaacagccgttatgagc
agtatggtaccttttcaacactgctgcgaatatcctgagataaatctttttggatttctc
ccaaaagctgaatcagacagttctttgacaagcctgtcaagttcagaaaagagtttcatt
tttataaataatcgtccagttcttcagaaggaaatactgaagttaattcgacaatattac
agtcaggtgacacaaaaggactgcactcgtttatatccagttttctttttgagtattact
gtacctgcctctgctgtggatgtgaatgtaacacctgataaaacacaagtgttgctgcat
tataaggaatctgtcttacttgcagttgaaaatgtgttgaaatcattgtatgggccacta
cctgctgcagtccctggtgaaagtaataaaacagatgttacctcagaagacatgtttgtt
catagaacagaccaagcagatgtggctgttaatgaaatgggaccatctggaaatgatgag
ctgcatgctcatacttcattcctttcactcagcagcgatgtgcaaaactgtcaagcagga
aaaaacgctgagatctgcttaaatcatcagacatttagtggtgataatgtacacagtcgc
ctggacaaaagagaagtttctaagagtgatgcatttccagacagttccttaaatttattg
cgtgaggaggagcagaatggacagaatatggctgatattgaaagtaagagtgttcctgtg
gactccgagtctaaaaaagccaatgagcatcttttgagttctgataatattgacaaaata
gataaaaatgaggaaaccttagtccctaaggacttacctgaaatctctgctgatagttgg
agtatgggaaatgcatttaaagatagtctgggagacaagctggaacctgttaagatcttg
attcctgaagttggagagacaactaataagcaaaatgaatatactggcgaaaaaagcggt
gatccacaaagctcaaatcaaagcataaagaaaaaaaatgtgataagtgaaaaatttgga
caggtgacagcttatgacttaattaatagcagaataataaagaaacctaagtctgcgttt
gaatttttcacacatgaatgtcgtccaaaattgataaatgataatccaaagaccagcatg
aatgacatcctgctgacagttaaagagcagtggaagaatttgagtgaagaggaaaaacag
aattacgaaatacaagcaactaaggaccgggaacggtacaacagagaggtcaagaaagcc
aatgcacagccaatgcaccgagcagcaaaggaggcagaaaaacacaaacccaaactaaag
agttctgcatcagaccagcagaagcttgacaagatatttcatgaccagattgaaaagaag
gggaaactggaacagcctgtgaaaattgtgacggtgcccttttctctgagttcctgtaga
cgtcaccttcagagacaagagagaaatgtttcagatgaacacgcgctcttcctgatccgc
cgtcagagttttcctgatgtctggatacttgctactgaaaaaaatgtaaagctgctgaat
ccatacagattggaagaggccctgctatgtaagagattattggtgaaccataagcttcca
gtagagaaactggacaatccagttgtcttaacagacagtcttattggtggatctcagtat
atggctgctcttcataaaatgcagaagaattaccagagtttccatggatcaggttatttg
tcagatccaaggcttgtagcaaatggattccagataaaagtgacagaaggtgtttcggct
acagaaagtcatctggaaatagaagggatggcaaattgtctgccatattatggaatttct
gatttgaaagaaattctgaatgcagtagttaacagaaatgcaaaggaagtgtatgaatgt
aggcctctcaaagtgataaattacttggagggagaagcagtacgtttagctcggcagctg
cccttacatttgtcaaaagaagatgtgcaaaacacaatttacaggatgaagcaacagctt
ggaaaggaaaataaaggctgcgttcatggtcgtcctttttttcatcacttaacagatatt
ccagaagctgacaagcacaactccatggaaattattcagtaa
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