Hirundo rustica (Barn swallow): 120755551 Help Entry 120755551         CDS       T09369                                  Symbol CDH23 Name (RefSeq) cadherin-23   KO K06813   cadherin 23 Organism hrt  Hirundo rustica (Barn swallow) Brite KEGG Orthology (KO) [BR:hrt00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    03037 Cilium and associated proteins [BR:hrt03037]     120755551 (CDH23)    04515 Cell adhesion molecules [BR:hrt04515]     120755551 (CDH23) Cilium and associated proteins [BR:hrt03037]  Primary cilia and associated proteins   USH complex and associated proteins    120755551 (CDH23) Cell adhesion molecules [BR:hrt04515]  Cadherins   Major cadherins    120755551 (CDH23) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Cadherin_FAT4_N Cadherin_CELSR2_9th Fibulin_C PCDH15_12th Flagellin_arch-type Motif Other DBs NCBI-GeneID:  120755551 NCBI-ProteinID:  XP_058277420 LinkDB All DBs Position 8:complement(2172267..2355273) Genome browser AA seq 3359 aa AA seqDB search MKCHVAAAGSFLPLLLLLELVSPGQGNRLPYFINYFFDTYLLINEDTPVGSSVTQLLARD LDNDPLVFGVVGEEASRFFAVESVTGVVWLRQPLDRETKSEFTVEFSVSDSQGVIKGTVN IQVGDVNDNAPQFHNQPYSVRIPENTPVGTPIFIVNATDPDQGAGGSVLYSFQPPSNFFA IDSGRGIVSVIRELDYEVTQAYQLQVNATDQDKNKPLSTLANLAITITDVQDMDPIFINL PYSTNIYENSPPGTTVRMITAIDQDKGRPRGIGYTIVSGNTNSIFALDYISGALTLNGPL DRENPFYSAGFILTVKGTELNDDRTPSNASVTTTFNILVIDVNDNAPEFNSSEYSVAIPE LAQVGFALPLFIQVQDKDEGPNSVFEVYLVGNNSNHFIISPTSIQGKADIRVRVAVPLDF ETIPRYEFSLFANESIPDHVGFARVKINLINENDNRPVFSKALYNVSLLENTTVGTTVLQ VHATDNDVGTYGKVSYFFSDDPDRFSLDKDTGVIILTARLDFETTQRYTLTVIARDGGGE ETAGRVRINVLDVNDNVPTFQKEAYLGALRENEPSVTQVVRLRASDEDSPPNNQISYSIV QASAFRDYFDITVSEGYGVISVNHPLDYEQVANGVIYLTVMAKDAGNPPLNSTVPVTIEV FDENDNPPTFSKPSYVIAVMEDIMAGATVLFLNATDMDRSREYGQESIIYSLEGSSHFRI NARSGEITTTSLLDREAKSEYILIVRAVDGGVGHHQKTGIAMVNITLLDINDNYPTWKDE PYFINLVEMTPPNSDVTTVVAVDPDLGENGTVVYSIRPPNKFYSLNSTTGKIRTSGVLLD RENPNAQEAQLMRRIVVSVTDCGRPPLRATSSATVFVNLLDLNDNDPTFQNLPFVAEIAE GLPVGSSVFQVVAIDLDEGPNGQVSYRMQVGMPRMDFLINSTSGLVTSTAVLDRERIPEY LLRVVASDAGAPAKSSTSTLTVKVLDVNDENPTFFPAVYNVSLPEDVARDFKVVRLNCTD ADIGLNAELSYFITGGNQDGKFSVGFRDGVVRTVVSLDRETVASYTLILEAIDNGPTGNR RTGTATVYVTVLDVNDNRPIFLQSSYEVSVPEDIPAASSIVQVKATDADEGINGRVWYRI VKGNEHNHFRINPSTGLVMRGVRHLDREQNSSHVLEVEAYNTEQGPMRSSVRVIVYVEDV NDEVPVFTQRQYNRLGLRETAGIGTSVAVVRATDRDTGNGGLVNYKIVSGAEGKFEIDES TGLITTIEYLDYETKTSYLMNVSATDQAPPNNQGFCSVYVSLLNELDEAVQFSNSSYEAV IMENIPLGSEVLRVQARSIDNLNQITYKFDPNTNPQALSLFKINGITGVITVRGQVDREK GDFYTLTVVADDGGPKIDSTVVTITVLDENDNSPQFDITSDSSVSVAEDSPVGKRVALVL ARDPDAGRNGQVTFSLTSGNIGRAFEIRTTNNTYGEVFVARPLDRELLDHYTLRIQASDG GVPPRRKEHILRVNVLDVNDNPPVIDSPFGYNVSVSENVGGGTAVAQVRATDRDIGLNSV LSFYITRGNEDLTFRMDRVTGEIATRPSPPDRERQSFYSLVVTVEDEGNPSLSATTMVYV TILDENDNAPAFRQQLYEVTLDEGPSTLNATLVTVQALDWDEGPNGTVAYAITEGNIMGT FHIDNATGEIRTVKELDYEISHGRYTLIVTATDQCPIISRRLTSTATVLVNLNDINDNCP TFPRPYEGPFDVTEGQPGPRVWTFLAHDGDSGPSGQVEYSIIAGDPLGEFVISPVEGELR VRKDAELDRENIPFYNLTIAARDRGVPPLSSTILVGIRVLDINDNDPVLLNLPMNLTLSE NAAVSSFVTRVLARDADQGPNALLTFDITAGNTENAFYINSTSGVVYVNRPLDRERVAEY RLTVTVKDNPENMRNARRDFDLLVISLADENDNRPLFTQSSYQAEVMENSPPGTPVTMLN GPIQALDADQGSNAVVTYGLLKASPDLFVVNNKTGVVSVKPGGVIDREALLDPHLEFTLV ARDVGGLNSTASLAVTILDDNDNRPVFQPASITARLLENSPPGFSVLQVTATDADSGLNQ QLDYRIEGGGQDRFLIDATTGVIRVANITIDREERDAYRLTVVAVDQGTPALSGTATVSI VIDDINDCRPEFINPIQTVSIPESAPPGTVVAEVTAIDRDLHPRLEYYLLGIVARDDTDA LVPEQQGVFTVDFRTGAVKIKTPLNRELVATYEVTISVHDNASEVIDHSVSVPNAKLTVN VLDVNDNTPRFRPFGVTYFTERILEGATEGTTLISISAVDPDKGANGQITYELLNLSPEG YACLEDHSAGKVVANRTVDYEEVQWLNFTVRASDNGSPRRSAEIPVYLQIVDINDNNPVF SQPSYQKAVFEDVPLGTVILSVTATDADSGQFALIQYSLGDGEGKFGINPSTGDIYILSA LDREKKDHYTLTAVARDNPGDVSSNRRENSVQVLITVLDINDVRPQFSKSQFSTSVYENE PAGTSVITMSATDLDEGDNGVVTYSIEGPGAEAFKINKDSGLVTSRRRLQSYERFNLTVV ATDKGHPPLWGTTMLHIEVIDINDNRPVFIRPPNGTILHIKEEIPLRSNVYEVYATDKDE GLNGVVLYNLLKTGAGNKDWEYFSIDSVSGLIQTAMRLDREKQAVYNLIIVACDQGQPPY ETMQPLQVALDDIDDNEPIFLRPPRDSPQYQALSVPEHSRPGTVVGNVTGAVDADEGSNA IVYYFIAAGNQESNFQLSREGKLKVLRDLDREKEPYHSIIVKASSQRNWAPPRGQRAGRA QFWDLSEDLTLQEVRIFLDDINDQSPQFTKSEYTAGVATDAKVGSELIRVLAVDADVGNN SLVLYNILGIRYIKQHSNDSEEVANIFSIGTLDGILRTFDLFTAYNPGYFVVDIMASDLV GHNDTAVVGIYILRDDQRVKIIINEIPDKVRQFEEEFISLLSNITGAIVNTDDVQFHVDK KGRVNFAQTELLIHVVNRETNRILDVDRVIQMIDENKEQLRNLFRNYNVLDVQPAIAARA PDDLSALQMAIIVLAVLLFLAAMLFILMNWYYRTVHKRKLKAIVAGSTGNRGFMDIMDMP NTNKYSFDGANPVWLDPFCRNMELAAQAEHEDDLPENLSEITDLWNSPARTHGTFGREPS AAKPEDDRYLRAAIQEYDNIAKLGQIMREGPIKGTLLKVVLDDYMRLKKLFAQRMVHKAT ASQGDRSSVSELIQKELEDEEEERSPGQGSLRFRHKQPVELKGPDGIHVVHGSTGTLLAS DLNSLPEDDQKVLGRSLETLTADCGGYSDHNARTESAKSTPLHKMREVIMESPLEITEL NT seq 10080 nt NT seq  +upstreamnt  +downstreamnt atgaagtgtcacgtggctgctgccggcagcttcctgcctctcctcttgctcctggagctg gtctctccaggacaaggcaatcgcctgccgtacttcatcaactacttctttgacacctac ctgctgatcaacgaggacacacctgtgggttcctccgtgactcagctgctggcccgggac ctggacaacgacccgctggtcttcggggtggtcggggaggaggccagccggttctttgcc gtggagagcgtcaccggtgtcgtgtggctcaggcagcccctggacagagagactaagtca gaattcacggttgaattttctgtcagtgacagccaaggggtgatcaaagggacggtcaac atccaggtgggagacgtgaacgacaacgccccgcagttccacaaccagccctacagcgtc cgcatcccggagaatacccctgtgggcactccgattttcatcgtgaacgccacggacccg gaccagggggcgggaggcagcgtgctttactccttccagcccccttccaacttctttgcc atcgacagcggccgtggcatcgtgtcggtgatccgggagctggactacgaggtcacgcag gcctaccagctccaggtgaacgccacggaccaagacaaaaacaagccactgtctactctg gccaacctggcaatcaccatcacagacgtgcaggacatggaccccatcttcatcaacctg ccctacagcacaaacatctacgagaactcgcctccgggtaccaccgtgcggatgataaca gccatcgaccaggacaagggacgtccccgcggcatcggctacaccatcgtctcaggtaac accaacagcatctttgcactggactacatcagcggagccttaaccctgaatgggcctctg gaccgggaaaatccgttctacagcgctggattcatcctcacagtgaaggggacagagctg aacgatgaccgcactccctccaacgccagcgtcaccaccaccttcaacatcctggtcatc gacgtcaacgacaacgctcccgagttcaacagctccgagtacagtgtggccatcccagag ctggcccaggtgggctttgcccttcccctcttcatccaggtgcaggacaaggatgaggga cccaatagcgtttttgaggtttacctggtgggcaacaactccaaccacttcatcatctcg ccgacctccatccaggggaaggcggacatccgtgtccgtgtggcggtgccgctggacttc gagaccattcctcgctacgaattttcgctcttcgcaaacgagagcatccctgaccacgtc ggcttcgcgcgggtgaaaatcaacctcatcaacgagaacgacaaccggcccgtgttcagc aaggccctctacaacgtcagcctcttggagaacaccaccgtgggcaccaccgtcctccag gtccacgcaactgacaatgatgtgggcacgtatgggaaagtcagttatttcttcagcgac gaccctgaccgtttctccctggacaaggacacaggtgtgatcatcctgaccgctcggctg gacttcgagaccacgcagcgctacacgctgaccgtcatcgcccgggatggcggcggggag gagacggcggggcgcgtcaggatcaacgtccttgacgtcaacgacaacgtccccaccttc cagaaggaagcctacctgggggccctgcgggagaacgagccctccgtcacccaggtggtc cggctccgggcgtctgatgaggactcccctccaaacaaccagatctcctacagcatcgtg caggcgtcagccttccgcgactacttcgacatcacggtgtcagaagggtacggagtgatc agcgtcaaccaccccctggactacgagcaggtggccaacggggtcatctacctgacggtg atggccaaggacgccggcaacccgccgctcaacagcaccgtcccggtcaccatcgaggtg tttgatgaaaatgacaatccccccacgttcagcaagccctcctacgtgatagccgtcatg gaggacatcatggcaggggccacagtgctgtttctcaatgccacagacatggaccggtcc agggagtacgggcaggagtcaatcatctactccctggaaggctcctcgcattttcggatc aatgctcgctcaggagaaatcacaacaacatctttgctggaccgggaggccaaatccgag tacatcctcattgtccgggcggtggatggaggcgtggggcaccatcagaagacaggcatt gctatggtgaatatcacgctgctggacatcaatgacaactatcccacctggaaggacgag ccatacttcattaacctggtggaaatgaccccccccaactcggacgtcaccacggtggtg gctgttgacccggacctgggggagaacggcacggtggtgtacagcatccggcctcccaac aagttctacagcctcaacagcaccacgggcaagatccgcacctcgggcgtgctgctggac cgggagaatcccaacgcccaggaggcccagctcatgcgcaggatcgtggtgtccgtcacc gactgtgggaggccacccctgagagccaccagcagtgccacagtttttgtcaacctgctg gacctgaacgacaatgaccccactttccaaaacctgccctttgttgctgagatcgccgag ggcctccccgtgggctcctctgtcttccaggtcgtggccatcgacctggacgagggcccc aacgggcaggtgtcgtaccgcatgcaggtggggatgccccgcatggatttcctcatcaac agcaccagcgggctggtcacctccacggccgtgctggacagggagcggatccccgagtac ctcctgcgggtggtggccagcgacgccggcgcgcccgccaagagctccaccagcaccctc actgtcaaagttctggacgtgaacgacgagaaccccaccttcttccccgccgtctacaac gtgtccctgcccgaggacgtggcccgggatttcaaagtggtccggctcaactgcacggat gctgacatcgggctgaacgctgagctcagctacttcatcacaggtgggaaccaggatggc aaattcagcgtcggcttcagggatggggtggtcaggacagtcgtgagtctggacagggag acagtggcatcctacaccctgatcctggaggccatcgacaacggccccaccgggaaccgg cgcaccgggactgccaccgtgtacgtgaccgtcctggatgtcaacgacaacagacccatc ttcctgcagagcagctatgaagtcagtgtccccgaggacatcccggctgccagcagcata gtgcaggtgaaagccaccgatgcggacgaaggcattaacgggagagtgtggtacaggatt gtcaagggaaatgagcacaaccacttccgcatcaatcccagcacggggctggtgatgcga ggtgtgcggcacctggacagggagcagaactcctcccacgtgctggaggtggaggcctac aacacggagcaggggcccatgaggagctccgtgcgggtgatcgtgtacgtggaagacgtc aacgacgaggtgccggtgttcacccagcgccagtacaaccgcctggggctgcgggagacg gcgggaatcgggacatcggtggcagtggtccgggccaccgaccgagacacagggaacggc ggtctggtgaactacaaaatcgtgtcaggtgcggaagggaagtttgagatcgacgagagc acgggcctcatcaccaccatagagtacctggactacgagaccaaaaccagctacctgatg aatgtgtctgccacggaccaagcgccccccaacaaccagggcttctgcagcgtgtacgtc agcctgctgaatgagctggacgaggccgtgcagttctccaacagcagctacgaggccgtg atcatggagaacatccccctgggctccgaggtgctccgcgtccaggctcgctccatcgac aacctcaaccagatcacctacaagtttgaccccaacaccaacccacaagcgctgtccctc ttcaaaatcaatggcatcacgggtgtgatcacggtcagaggccaggtggaccgagagaaa ggggatttctacaccttgacagtggtggctgatgacggaggaccgaagattgactccaca gtggtgacaatcacagtcctggacgagaacgacaacagcccccagttcgacatcacctct gactcgtctgtcagtgtggccgaggacagccctgtgggcaagagggtggctctggtcctg gcccgagatccagatgcaggcaggaatggccaggtgactttctcactgacgtcagggaat atcggccgggcctttgagatccgtaccaccaacaacacctacggcgaggtgtttgtggca cggccgctggaccgggagctgctggatcactacaccttaaggatccaagcatcagatggc ggcgttcctccccggaggaaggagcacattctgcgagtgaacgtccttgatgtcaacgac aaccctcctgtcatcgacagccccttcggctacaacgtgagcgtgagtgagaacgtcggc ggtggcacggcggtggcccaggtacgcgccaccgaccgggacatcggcctgaacagtgtc ctctccttctacatcacccgtgggaatgaggacctgaccttccgcatggaccgtgtcacc ggcgagatcgccacccggccttccccgcccgaccgcgagcgccagagcttctacagcctc gtggtcaccgtggaggacgagggcaacccctccctgtcggccaccaccatggtgtacgtc accatcctggatgagaatgacaacgctcccgccttccggcagcagctgtacgaggtgacc ctcgacgaagggccctccacgctcaacgccacgctggtcaccgtgcaggccctggattgg gacgagggacccaatggcacggtggcctatgccatcaccgaaggcaacatcatgggcacc ttccacatcgacaacgccacgggggagatccgcacggtgaaggagctggactacgagatc agccatgggcgctacaccttgatcgtcaccgccaccgaccagtgccccatcatctcgcgc cggctgacgtcgaccgccacagtgctggtgaacctcaatgacatcaacgacaactgtccc accttcccacggccctacgagggtcccttcgatgtcactgaggggcagcccggccctcgt gtctggactttcctggcccatgacggggactcaggacccagtggacaagtggaatacagc atcatcgccggggaccccctgggggaatttgtcatctccccggtggaaggagagctgcgg gtgcggaaggacgccgagctggaccgtgagaacatccccttctataacctcaccatcgcc gcccgggaccggggggtgcctcccctcagctccactatcctggtgggtatccgtgtgctg gacataaacgacaatgaccccgtgctgctgaacctcccgatgaacctcaccctgagcgag aacgctgccgtctccagcttcgtcacccgcgtcctcgcgcgggacgcggaccagggcccc aacgcccttctgaccttcgacataacagcagggaacacagagaatgccttctacatcaac agcaccagcggcgttgtgtacgtgaaccgcccgctggacagggagcgtgtggccgagtac aggctgaccgtgacggtgaaggacaaccccgagaacatgcgcaatgccaggcgggatttt gacctgctggtcatttccctagctgatgagaatgacaaccgccctctcttcacccagagc tcctaccaggctgaggtgatggagaattcgccccctgggactccggtcacaatgctcaat ggacccatccaagctctggatgctgaccagggcagcaatgctgtggtgacctatgggctc ctgaaggcgtccccagacctctttgttgtcaacaacaagacaggtgtggtttcggtgaag cctggaggtgtgatagaccgagaggctttgctggaccctcacctggaattcactctggtg gctcgtgatgtgggggggctgaacagcactgccagcctggcagtgaccatcctggatgac aatgacaaccgccctgtcttccagccggcatccatcacggcgcggctgttggagaacagc cctccaggcttctccgtcctccaggtgacagccacggatgctgacagtggcctcaaccag cagctggactaccgtattgagggtggcggtcaggacaggttcctgatcgatgccaccacg ggggtgatccgcgtggccaacatcaccatcgaccgcgaggagcgcgatgcctaccggctg accgtggtggccgtggaccagggcaccccggcgctgtcgggcacggccaccgtcagcatc gtcatcgacgacatcaacgactgccggcccgagttcatcaaccccatccagacagtcagc atccccgagtcggctccccctggcaccgtggtggccgaggtgaccgccatcgacagggac ctccaccctcgcctggagtactacttgctggggatcgtggcccgcgatgacacggacgcg ctggtgcccgaacagcaaggagtgttcacggtggattttaggacaggagctgtgaagatc aaaactcccctcaaccgtgaactagtggccacctacgaggtcaccatctctgtccatgac aacgccagcgaagtcatcgaccactcggtcagcgtccccaacgccaagctgacagtcaac gtcttggatgtcaatgacaacacaccccgcttccgccccttcggggtcacctatttcact gagaggatcctggagggagccacggagggcaccactctcatctccatctcagcagtggac ccggacaaaggtgccaatgggcagatcacctacgagctgctgaacctctctccggaaggt tacgcctgtctggaggaccattcggcagggaaggttgtggccaacaggacagtggactac gaggaggtgcagtggctgaacttcaccgtccgcgcctccgacaacggctctccccgcaga tccgctgagatccccgtgtacctgcagatcgtggacatcaatgacaacaaccctgttttc agtcaaccgtcctaccagaaagctgtatttgaggacgtgccactggggacggtcatcctg agcgtcacggccaccgatgcggattctgggcaatttgctctcatccagtacagcctggga gatggagagggcaagtttgggataaatcccagcacgggtgacatctacatcctgtcagcc ctggaccgggaaaagaaggatcactacacactgacagccgtggccagggacaaccctggg gatgtctccagtaaccgtcgggagaactctgtgcaggtgctgatcacagtcctggacatc aacgatgtcaggccccagttcagcaagagccagttcagcaccagcgtctacgagaatgag cctgcggggacatcggtgatcaccatgagtgccactgacctggacgaaggggacaacggc gtggtgacctacagcatcgagggtcctggagcggaggctttcaagatcaataaagactct gggcttgtcacatcccggcgacgcctgcagtcctacgagaggttcaacctgactgtggtg gccacggacaaggggcatccccctctctgggggaccaccatgctccacatcgaggtcatc gacatcaacgacaaccgccccgtcttcatccgcccgcccaacggcaccatcctgcacatc aaggaggagatccccctgcggtccaacgtctacgaggtctatgccacggacaaagacgag ggtctcaacggcgtggtgctctacaacctgctgaaaaccggagcagggaacaaggactgg gagtacttcagcatcgactctgtcagcgggctgatccagacggccatgcggctggaccgg gagaagcaggcagtgtacaacctgatcatcgtggcctgcgaccagggccagccaccctac gagaccatgcagccgctccaggtagcgctcgatgacatcgatgacaatgaacccatcttc ctcaggccacctagggatagcccccagtaccaggcactctctgtcccggagcactcgcgg ccgggcaccgtggtggggaacgtcactggtgcggtggacgcagacgagggctccaacgcc attgtctactacttcatagcagctgggaaccaggagagcaacttccagctgagccgagaa gggaagctgaaggtcttgcgagacctggaccgggagaaggagccgtaccactccatcatc gtcaaagcatccagccagaggaactgggctcctccccggggccagcgggcgggcagagcc cagttctgggatctcagcgaggacctgacccttcaggaggtgcggatcttcctggacgac atcaatgaccagtccccccagttcaccaagtcggaatacacggcgggggttgccaccgat gccaaggtggggtcggagctgatcagagtgctcgcggtggacgccgatgtgggcaataac agcctggtcctgtacaacatcctgggcatccgctacatcaagcaacattccaatgactct gaggaggtggccaacatcttcagcatcggaacgcttgatggcatcctgcgaacctttgac ctcttcacggcctacaaccccggctactttgtggtggacattatggcctctgacctggtg ggccacaatgacacggccgttgtggggatttacatcctgcgggatgaccagcgggtcaaa atcatcatcaacgagatcccggacaaggtcaggcagttcgaggaggagttcatcagcctg ctctccaacatcacaggcgccatcgtcaacaccgatgacgtgcagttccacgttgacaag aaaggccgggtgaactttgcccagacggagctgctgatccacgtggtgaacagggagacc aaccgcatcctggacgtggatcgggtcattcagatgatagatgagaacaaggagcagctg aggaatctcttcaggaactacaatgtgctggacgtgcagcctgccattgctgcccgggca ccggacgacctctcggctctgcagatggcaatcatcgtgctggccgtcctgctcttcctg gctgccatgctcttcatcctcatgaactggtactaccggacagtgcacaaaaggaagctg aaagccatcgtggctggctccactggaaacagaggcttcatggacatcatggacatgcca aacaccaacaagtactcctttgatggggccaacccggtgtggctggaccccttctgcagg aacatggagctggcggcgcaggcggagcacgaggacgacctgccggagaacctgagcgag atcaccgacctctggaacagccctgcccgcacccacggcaccttcgggagagagccctcc gccgccaagcccgaggacgaccgctacctgcgggcggccatccaggagtacgacaacatc gccaagctggggcagatcatgcgggagggacccatcaagggcactctcctgaaggtggtc ctggatgattacatgcgcctgaaaaagctctttgcccagcggatggtgcataaggccacc gccagtcagggggaccgctcctcggtctcggagctgatccagaaggagctggaggacgag gaggaggagcgcagccccggccagggcagcctgcgcttccgacacaagcagccagtggag ctgaaaggtcccgacggcatccacgtggtgcacggcagcacgggcacgctgctggcctcc gacctcaacagcctgcccgaggacgaccagaaggtgctgggtcgctcgctggagactctg accgccgactgcgggggctacagcgaccacaacgcgcgcaccgagtcggccaagtccacg cccctgcacaagatgcgggaggtgatcatggagagccctctggagatcaccgagctatga

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