Hirundo rustica (Barn swallow): 120755639
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Entry
120755639 CDS
T09369
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hrt00536
]
120755639 (COL13A1)
Glycosaminoglycan binding proteins [BR:
hrt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120755639 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
120755639
NCBI-ProteinID:
XP_039926837
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All DBs
Position
8:2017729..2074421
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AA seq
667 aa
AA seq
DB search
MGIPGRPGLKGQSGEKGAPGEAGMSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGQK
GEMGAAGPRGEPGLPGQKGEKGQCAEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQGQAGI
QGPPGPPGPPGPAGPEGIPGRPGPTGPPGRAGEPGKPGRDGKGLPGPPGPKGDAGIQGYP
GRKGEVGESGLPGAHGLPGASGPKGEKGDAGTKGERGMPGLPGRHGSKGAPGTAAAGMKG
EPGTPGEKGDPGVPGRMGPPGLPGKRGQRGEKGRAGDPGPPGLPGPKGEKGIVENALVGA
KGEPGPPGLPGPPGPKGEAGDIGQPGAAGSQGEKGERGSPGDQGPMGPRGPKGEPGKDEV
IDYGGNISEALQEIRTLALMGPPGRPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKAG
EMGPPGPQGLPGKDGPPGKKGEPGHVGVRGEKGDKGEPGQAGSPGLDGPTGEKGERGDQG
MPGPSGLPGPIGLPGLTGEKGEPGEHGDKGNPGESISGPPGPQGPPGPPGLQGIPGPKGE
AGIDGVKGEKGAQGEKGDRGPLGLPGASGLDGRPGPPGIPGPTGVSGPAGPKGERGSKGD
PGVAGPMGPAGLPGLQGLPGDKGVRGERGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLP
VQGCWNK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgggaatccctgggcggccgggactaaaagggcagtccggagagaagggtgctccagga
gaagcaggcatgtctatcatcgggccccgcggtccacccggacagcctggaacaagaggt
tttcctggattcccgggccctattggcttggacggcaaaccgggccatcctggacagaag
ggagagatgggtgctgcaggtcccaggggagaaccgggactcccaggacaaaaaggagag
aagggtcaatgtgcagagtacccgcacaggctgttgcctctcctcaattcagtgcggctg
gctccacctccggtcataaagagacgcactttccagggtgaacaaggacaagcagggatc
caaggtcccccagggccccctggtcccccagggcctgctggacccgaaggaatcccagga
cgtcctgggccaactggaccccctggcagagcgggagaacctggaaagcctggcagagat
ggaaagggcttacctgggcctcctggaccaaagggagacgctgggattcagggataccct
ggcagaaagggtgaggtgggcgagtcaggcctgcccggtgcccatggcctccctggagcc
tctggccccaagggtgaaaaaggggatgctggcacaaagggggagagaggcatgccaggg
ctgccaggaagacatggctctaagggcgctcccgggacggccgccgcagggatgaagggc
gagcctgggactccaggagaaaagggagatcctggagtcccagggaggatgggcccccca
ggtttgccagggaagagggggcagcggggtgagaagggacgagctggtgaccctgggcct
cctggactccctggcccaaagggagagaagggaattgttgagaatgccttggtgggagct
aaaggagagcctggccctccaggtctgcctggaccccctggaccaaagggagaagctggt
gacattggtcagcctggtgctgcaggatcacagggagaaaagggggaacgtggttcaccg
ggagaccagggacccatgggcccaaggggccccaaaggagagcctgggaaggacgaagtg
atagactatggtgggaacatcagtgaagctctgcaggaaatacgaactttggccttgatg
ggacccccaggacgtccaggtgtggctggacctccagggccaccgggacagaagggtgaa
attggcttgccgggtcctccaggccacgatggagaaaagggaccacgtggcaaggccgga
gaaatggggcctcctggccctcagggtctgccaggaaaggatggacctcctggaaaaaag
ggggagccaggccacgtcggggtcagaggagagaagggcgataagggagagccgggccaa
gcgggctcaccgggtctagatggccccactggagagaaaggcgaacgaggtgaccaaggg
atgccaggaccatcaggattgccagggcccattggacttccaggattgacaggagagaag
ggtgagcctggggagcatggagacaaaggaaacccaggagaatcgatatctgggccccct
ggaccccaaggccctccaggacctccaggtcttcagggcattcccggacccaagggggaa
gcagggattgatggagtgaaaggagagaagggtgcccagggtgaaaaaggagacagaggg
ccactgggattacccggtgcttcaggtttagacggcaggcctggaccaccgggtattcca
ggaccaactggggtttcaggaccagcaggaccaaaaggagaaaggggcagtaaaggagat
cctggagttgcaggaccaatggggccagcagggcttcctggtttacaaggtctacctggt
gacaagggagtccggggggagaggggcaagaaaggctctagagggtctaaaggggataag
ggagaccaaggagcacctggattagatgcaccctgtccgttgggggaagatggccttcca
gttcaaggctgctggaataagtga
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