Hirundo rustica (Barn swallow): 120755683
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Entry
120755683 CDS
T09369
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120755683 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrt03021
]
120755683 (TAF5)
03036 Chromosome and associated proteins [BR:
hrt03036
]
120755683 (TAF5)
Transcription machinery [BR:
hrt03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120755683 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
120755683 (TAF5)
Chromosome and associated proteins [BR:
hrt03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120755683 (TAF5)
STAGA complex
120755683 (TAF5)
TFTC complex
120755683 (TAF5)
SAGA complex
120755683 (TAF5)
SLIK complex
120755683 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_SPT8
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
RAB3GAP2_N
eIF2A
VID27
Motif
Other DBs
NCBI-GeneID:
120755683
NCBI-ProteinID:
XP_039926951
LinkDB
All DBs
Position
8:23730702..23741435
Genome browser
AA seq
783 aa
AA seq
DB search
MAALHEEPAEVAAAQPDPEAGTPPPPPAVPPAAAPAAVPAAAAEGEAAGAGGDAAPPKPA
APGPAASPAALDRQTLVAVLQFLRRSNLRESEEILRREARLLGDDLGAAALSPASAGLLG
GSGSDADSGEALLGRGTSAVAVAIGGNVATVATSSPGVAAVAAVPPGKVGSAVVVEDQPD
VSAVLSAYNQQGDPTLYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHE
SEAKSFFERFHGDQECYYQDDLRVLSSLTKKEHMRGNETMLDFRTSKFVLRISRDSYQLL
KRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFFGLL
KEPEFDVPLDDEDEEGENEEGKPKKKKPKKDNVGSKSKKQDPNAPPQNRIPLPELKDSDK
LDKVMNMKEAARRVRLGPECLPSICFYTFLNAYQGLTAVDITDDSSMIVGGFADSTVRVW
SVTPKKLRSVKTAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPDRNY
LLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHY
QPLRIFAGHLADVTCTRFHPNSNYIATGSADRTIRLWDVLNGNCVRIFTGHKGPIHSLAF
SPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTIYALRFSRDGEILASGSMDNTVRL
WDAVKAFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVVHLHFTRRNLLLAAGAY
SSQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgcatgaggagccggctgaggtagcggcggcgcagccggaccccgaggcg
gggacgccgccgccgccgcccgcggtgcctcccgccgccgctcccgccgccgtcccggcc
gccgcggcggagggagaggcagcgggagccggtggggatgcggcaccccctaagcccgcg
gcgccgggcccggccgcctccccggcggcactggaccggcagacgctggtggccgtactg
cagttcctgcggcgcagcaacctccgcgagtccgaggagatcctgcgtcgcgaagcccgc
ctgcttggcgacgacctgggtgccgccgccctcagccccgccagcgccgggctcctgggg
ggctcgggcagcgacgcggactccggcgaggcgctgctcggccggggcaccagcgctgtc
gccgtcgccatcggaggcaacgtcgccactgtcgcgacttccagccccggggtggctgcg
gttgccgccgtgccgccgggaaaagtgggaagcgcggtggttgtggaggatcagccggac
gtgagcgcggtgctgtcggcctacaaccagcaaggggacccgacgctgtacgaggagtac
tacagcgggttgaaacacttcatcgagtgctccctggactgtcaccgggcagaattgtct
cagctcttttatcctctcttcgtgcacatgtacttggaattggtctacaatcaacatgag
agtgaggcaaagtctttttttgaaagatttcatggggatcaggagtgctattaccaggat
gacctgcgtgtattgtcaagcttaacaaaaaaagaacatatgagaggtaacgagaccatg
ctggattttcgaacaagcaagtttgtgctgcgcatttctcgtgattcctaccagctcctg
aagaggcatcttcaggaaaagcagaacaatcagatctggaacattgttcaggagcatctt
tacattgatatctttgatggaatgcctcgcagtaaacaacagatagatgctatggttgga
agcttggctggggaggcaaaacgagaggctaataaagcaaaggttttctttggcttattg
aaagaaccagagtttgatgtgcctttggatgatgaagatgaagaaggagaaaatgaggaa
ggaaagccaaagaagaaaaaaccaaaaaaagataatgtagggtcaaaaagtaaaaaacag
gaccctaatgctcctccccaaaacagaattcctctgccagaactgaaagactctgacaag
ctggataaagtaatgaatatgaaggaagctgcgaggcgagtgcgtcttggaccagagtgc
ttgccctccatctgtttctacacattcctaaatgcttaccagggtctgactgcagtggat
attaccgatgactccagcatgattgtaggaggctttgctgactctactgtcagagtgtgg
tccgtgactccaaagaagctacgtagtgtgaaaacagctgcagacctcagtctcattgac
aaagaatcagatgatgtcttggagaggatcatggatgagaaaacagcaagtgagttgaag
attttatatggtcacagtggacctgtctatggcaccagcttcagtcctgataggaactat
ctgttgtcctgttctgaggatggcactgtgagattgtggagtctccaaacattcacatgt
ttggtggggtataaaggacacaattatccagtctgggatacacagttctctccttatggt
tattactttgtgtctgggggacacgacagagtggctcgtctgtgggcaacagatcactac
cagccattacggatctttgctggccaccttgcagatgtgacatgtacccgatttcatcca
aactccaactatattgctacaggctcagcagacaggactataaggctctgggatgttttg
aatgggaattgtgtaagaatattcactggacataagggaccaattcattcattggcattt
tctcctaatggacgattcctggctactggagcaacagatggaagagttctgctgtgggat
attggacatggcttgatggttggcgaattgaaagggcacactgacactatctacgcgctc
agattcagtagggatggggagattttagcatcaggttcaatggataacacagttcgtctg
tgggatgctgtgaaggcatttgaagatttagaaaccgatgactttactacagccactgga
cacataaacttgcctgaaaactcacaggacttgctactgggcacatacatgaccaaatca
acgccagttgttcatctccatttcacacgcaggaacctgctgctggctgcgggagcctac
agctcacagtag
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