Hirundo rustica (Barn swallow): 120756194
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Entry
120756194 CDS
T09369
Symbol
TRUB1
Name
(RefSeq) pseudouridylate synthase TRUB1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hrt03016
]
120756194 (TRUB1)
Enzymes [BR:
hrt01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
120756194 (TRUB1)
Transfer RNA biogenesis [BR:
hrt03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
120756194 (TRUB1)
Prokaryotic type
120756194 (TRUB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
DMA
Motif
Other DBs
NCBI-GeneID:
120756194
NCBI-ProteinID:
XP_039928043
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All DBs
Position
8:28428424..28455916
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AA seq
288 aa
AA seq
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MAGEAGGAALGRAADKLFSLSGLFAVRKPKGPTSAAVLNLLKERLLAEAGVQTNRNKRNQ
VLKIGHGGTLDSAATGVLVVGIGKGTKMLGTMLAGSKKYTAIGMLGKATDTLDATGKVTE
EKPYDQVTKGDLENVLQKFTGDIMQVPPLYSALKKDGERLSTLMKRGEAVEAKPARPVRV
YSLSLQQFQPPLFTLGKDVECGGGFYVRSLVNDIGKELSTCATVQELTRTKQGPFTLEEH
ALQEDKWTIDEIARSLEHCTALLLGEPARKKLKTEHAGETAVICEDKR
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggaggcgggcggcgccgcgctgggccgcgcggccgacaagctcttctcgctc
agcgggctcttcgccgtccgcaagcccaagggacccacctcggccgccgtgctcaacctg
ctcaaggagcggctgctggcagaagccggtgtgcaaacaaacaggaacaaaagaaatcag
gttttgaaaattggacatggaggaactttggacagtgcagccacaggagttctggtggtt
ggaattggaaaaggaacaaaaatgttgggaactatgttggcaggttctaagaagtacact
gccattggaatgctgggcaaggctactgatacattggatgctacaggaaaagtaactgaa
gaaaaaccttatgaccaggtaacaaaaggagatcttgaaaatgttctgcaaaagttcaca
ggggacatcatgcaagttcccccactctattctgctttgaagaaggatggagaaaggctt
tcaactctgatgaagagaggggaagcagtggaagcaaagcctgctcggcctgtgagggtg
tacagcctttctctccagcagttccagccaccactgttcacgctgggtaaagatgttgaa
tgtggtggtggcttttatgtcaggagcctggtcaatgacattggcaaagagctctccacc
tgtgccacagtgcaggagctgacccgcaccaagcaggggccgttcacgctggaggaacac
gctctgcaggaggacaagtggacaattgatgaaattgctcggtccttggagcactgcaca
gccctgctcctgggagagccagctcggaaaaaattgaagacagagcatgctggtgaaact
gctgtgatctgtgaggataagcgataa
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