Hirundo rustica (Barn swallow): 120756586
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Entry
120756586 CDS
T09369
Symbol
SHH
Name
(RefSeq) sonic hedgehog protein
KO
K11988
sonic hedgehog
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
120756586 (SHH)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hrt01002
]
120756586 (SHH)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hrt00536
]
120756586 (SHH)
Peptidases and inhibitors [BR:
hrt01002
]
Cysteine peptidases
Family C46: hedgehog family
120756586 (SHH)
Glycosaminoglycan binding proteins [BR:
hrt00536
]
Heparan sulfate / Heparin
Morphogens
120756586 (SHH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Ribosomal_S6e
Vint
UL21a
Motif
Other DBs
NCBI-GeneID:
120756586
NCBI-ProteinID:
XP_039929058
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Position
1:148286980..148296846
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AA seq
425 aa
AA seq
DB search
MDEMLLLTRILLVGFICALLVSSGLTCGPGRGIGKRRHPKKLTPLAYKQFIPNVAEKTLG
ASGRYEGKITRNSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDKLNALAISVMNQW
PGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFPGSATVHLEKGGTKLVKDLRPGDRVLVADTEGRLLYSD
FLTFLDREDGSHKLFYVIETRQPRARLLLTAAHLLFVAPQQNQSQAGPASSRALFASRVR
PGQRIFVLGEGGQRLLPAAVHRVSLREEASGAYAPLTAQGTILIDRVLASCYAVIEEHSW
AHWAFAPFRLLQGLLAALCPSAEGSPMGDPEAPGIHWYSRLLYRIGSWVLDSDSLHPLGM
MVSSS
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaatgctgctgttgacaagaattctcttggtgggcttcatctgcgctctttta
gtctcctctgggctgacttgtggaccaggcaggggcattggaaaaaggagacaccccaaa
aagctgacccctttagcctataagcagtttattcccaatgtggcagagaagaccctaggg
gccagtggaagatatgaagggaagatcacaagaaactccgagagatttaaagaactaacc
ccaaattacaaccctgacattatttttaaggatgaagagaacacgggagctgacagactg
atgactcagcgctgcaaggacaagctgaacgctctggccatctcggtgatgaaccaatgg
cccggggtaaagctgcgggtgaccgagggctgggacgaggacggccaccactccgaggag
tccctgcactacgagggccgcgccgtggacatcaccacctcggaccgggaccgcagcaag
tacggcatgctggcccgcttggccgtcgaggctggcttcgactgggtctactacgagtcc
aaggcgcacatccactgctccgtcaaagcagaaaactcagtggcggccaaatctgggggt
tgcttccccggctcggccacggtgcacctggagaaaggcgggaccaagctggtgaaggac
ctgaggcctggagacagggtgctggtggccgacacggaaggccgtctgctctacagcgac
ttcctcaccttcctcgaccgcgaggacggctcccacaagctcttctacgtcatcgagact
cggcagccgcgtgcccggctgctgctgacggccgcccacctgctctttgtggccccccag
cagaaccagtctcaggcggggcccgccagcagccgggcgctgttcgccagccgcgtgcgg
ccgggccagcggatcttcgtgctgggcgagggcgggcagcggctgctgccggcggccgtg
caccgcgtgtcgctgcgggaggaggcgtcgggcgcctacgccccgctcaccgcccagggc
accatcctcatcgaccgcgtgctggcctcgtgctacgccgtcatcgaggagcacagctgg
gcgcactgggccttcgctcccttccgcctgctccagggcctgctggccgccctctgcccc
tccgccgaggggtccccgatgggagatcccgaggcccccggcatccactggtactctcgg
ctcctctaccgcatcggcagctgggtgctggatagtgactctctgcacccgctgggcatg
atggtgtcatccagctga
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