Hirundo rustica (Barn swallow): 120756602
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Entry
120756602 CDS
T09369
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120756602 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120756602 (NDC1)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120756602 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
GP41
Motif
Other DBs
NCBI-GeneID:
120756602
NCBI-ProteinID:
XP_039929077
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Position
9:5032395..5046699
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AA seq
672 aa
AA seq
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MEAAAGGQRALLRQVLGWRVAATITWSVLLLPICTAAFVVFSGLDPFHPVRWISNSFNDL
YTSYVIFCIFLMSVVIIVISIFNVEFYAVVPSIPCSRLALIGKIIHPQQVIHSFVHAIMG
MLVAWCATVMTKGRFQFLAVSCTPSESLEDAVPQMCLNEYHLFFLLSGAFLGYSYSLFYL
INNMNYLPFPIIQQYKYLRFRRSLPLLIKHSCVESLYFVRNFCVTYYFFGYIPKVWICTT
MDLHTDSKLHPLDTLSGLLDLSLFYHTWLSGVFLLMTWYIAWLLFKIYATESHHFPVQPT
FAQETDQCLPKILNSNPPLLIKFLALQDLMLLSQYSPVRRQEVFSLSQPGGHPHNWTAIS
RECLSLLSDLTQRLIAQQEAAAANGRAKPPVGEMKVPPQTPGAVGIEDMSFQSQRSNIVL
RASMSPLVKPSLMPVKTSPGSDVGSPFSSPALSYKMGIVDVKSPWHGSVQSPLVVRRGPK
LWTSISDQQMNGSHHESLPVLSAARTGSEAVQPKFIYTWLQNKQEQIKNFLSKRALIMYF
FSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDQFGVVQTTLPAILNTLLTLQEVV
DRHFKLPHVSSKPPRISGSLVDTSYKTLRFALRASLKTALYRITTVFGEHLNAVQVSTEH
KKRLQQFLEYKE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcggcgggcgggcagcgggcgctgctccggcaggttctgggctggcgagtg
gccgccaccatcacctggtccgtgctgctgctgcccatctgcaccgcggccttcgtcgtc
ttcagcggcctcgacccgttccacccggtgcgctggatctccaattctttcaatgatttg
tatacttcctatgtcatcttttgtatcttcctgatgtctgtggtgataatagtaataagc
atcttcaacgttgagttttatgcagttgtgccatcgataccatgctctcgattagcactg
ataggaaaaattattcaccctcagcaagtcatccattcctttgttcatgctatcatggga
atgctggttgcttggtgtgctacagtcatgacaaaagggaggttccagtttcttgctgtg
tcctgcacaccttcagagagcctagaagatgctgttcctcagatgtgcctaaatgagtat
cacctcttctttctgctttctggagctttcttgggatacagttacagccttttctatctt
attaacaacatgaattatttgccatttccaatcatacagcaatacaagtatttacgcttc
agaagatctctgcctctcctgataaaacacagttgtgtggaatcactatattttgttaga
aacttctgtgtcacttattacttttttggttatatcccaaaggtgtggatatgtaccacg
atggatctccatacagacagtaaattacatcctcttgacactctgagtggcttgttggat
ctctccttgttttaccatacctggctgagtggtgtgtttcttctgatgacctggtacatt
gcttggctgctcttcaaaatctatgccacagagagtcatcatttccccgttcaaccaaca
tttgctcaggagacagaccagtgcctgcctaaaatcttaaacagcaatcctcccctcctt
ataaagtttttagccttacaagatttgatgttactttcccagtattctcctgttcgacga
caggaagtctttagcctttctcagccaggtgggcacccacacaactggactgccatatcc
cgggagtgtttgagtctcctgagtgacctcactcagaggctgattgcacagcaagaagca
gcagcagcaaacgggagagcaaagccaccagtgggagagatgaaagtacctccacagact
ccaggagctgttgggatagaagacatgtcattccagtcacagaggtccaacattgttctc
agagcctccatgtctccactggttaagccatccctgatgcctgtgaagacatctcccggc
tctgatgttggctcacctttcagctctcctgctttaagttacaagatgggaattgtggat
gtcaagtctccttggcacggatcagtccaaagtccccttgtcgtgagaaggggaccaaag
ctgtggacgtcaatttcagatcagcaaatgaatggttcccaccatgaatccttgccggtg
ctctctgctgcaagaactggcagtgaggcagtgcagccaaaatttatttacacatggctt
cagaacaagcaagaacagataaaaaacttcttgtccaaacgagcgctgataatgtatttc
ttcagcaagcacccagaagcttccatccaagctgtcttctctgatgcccaaatgcacatc
tgggctttggaaggtctgtctcacttggtagcagcctcttttactgaagaccagtttgga
gttgtccaaactacactgccagctatcctgaacacgttactgactcttcaggaggtcgta
gacagacatttcaaactgccacatgtttctagcaaacctccccggatttcagggagtctg
gtggacacatcctacaaaacactacgatttgcacttagagcatctctgaaaacagcccta
taccggataactactgtctttggagagcacttgaatgctgtacaagtgtctacagaacat
aagaaaagacttcagcaattcctggagtacaaagaatga
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