Hirundo rustica (Barn swallow): 120756837
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Entry
120756837 CDS
T09369
Symbol
VCAM1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120756837 (VCAM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hrt04515
]
120756837 (VCAM1)
04090 CD molecules [BR:
hrt04090
]
120756837 (VCAM1)
04091 Lectins [BR:
hrt04091
]
120756837 (VCAM1)
Cell adhesion molecules [BR:
hrt04515
]
Immunoglobulin superfamily
VCAM
120756837 (VCAM1)
CD molecules [BR:
hrt04090
]
Proteins
120756837 (VCAM1)
Lectins [BR:
hrt04091
]
I-type lectins (Siglecs)
120756837 (VCAM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
C2-set
C2-set_2
Ig_6
Ig_4
C1-set
Ig_C17orf99
V-set_CD47
C2-set_3
ICAM1_3_5_D2
Motif
Other DBs
NCBI-GeneID:
120756837
NCBI-ProteinID:
XP_039929496
LinkDB
All DBs
Position
9:complement(19088555..19101595)
Genome browser
AA seq
541 aa
AA seq
DB search
MFKEMGRTSQAVLVILCVLRTVKAFEMEIIPAERIVAQIGDTLILTCNTTGCASPSFSWR
TQMDSPLGGKVNNYRTHSTLTMNPVSIVNSHSYLCTVICDEREKKEKSVEVELYSFPSDP
IIEISPSLVAGEPATVICKIPDVYPSDHLEVLLKKDAHVLHKKDFVEDDSTNTETKIVTY
TFHPTAEDIGKEITCVATLLIADMDFEPKERTSSQKLNANFGPQNTVITSSPGNSPMEGD
SLNLTCVTQSNPPAQIVWSKYLAEESIQHLIKNNVLSIPHVHFNDSGLYICEVINLVTNK
TEKATVDIIIQGAPVITKLSIEPSTTVQEGENVSIHCSAESNPPPKIILRRKSDNANMGP
YSARRILLPSVVFQNGGDYECVAENKFGNSKSEITLNVKYGPKNTMITVIPTAALKEGET
VTMKCTSSGNPAPVISWKKKKASGESEKISKNATLTIQNLKSQDLGLYECEAYNQYGKEE
KAVKLYVQARLEEPDQMIAVIIAFSSVAAVAVPAVAILIYVSRQAKINGSYSLVKALRLK
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgtttaaagagatgggaagaacaagccaggctgtgttagtaattttgtgtgtgttaagg
actgttaaagcttttgaaatggaaattataccggctgagagaattgtggcacagattgga
gacacactcatactcacatgcaatactactggctgtgcatcaccgagtttttcctggaga
acacagatggacagcccccttggaggaaaagtcaacaactacaggacacattctaccttg
actatgaatccagttagcattgtgaattctcattcttatctttgtactgtcatatgtgat
gagagagagaaaaaggagaagagtgtcgaagttgaactttactctttccccagtgatcct
atcattgagatcagcccatccttagttgctggagaaccagccactgtcatctgtaaaatt
cctgatgtgtatccttctgatcacctggaagttctcctaaagaaagatgcacatgttctt
cataagaaagattttgttgaagatgacagcacaaatacagagaccaaaattgtgacatac
acatttcatcccacggctgaagatattgggaaagagattacctgtgtggccaccttacta
attgctgatatggattttgaacccaaagaaagaacatcttctcagaaacttaatgcaaat
tttggtccacaaaatactgtcattacttcatctccaggcaactcgccaatggaaggagac
tctctgaacctcacttgtgtgactcagagtaacccgccagcacaaatagtttggagtaaa
tatttggctgaagaaagcattcagcatctgataaaaaacaatgttctttctattccccat
gtccatttcaatgattcaggactgtacatctgtgaagtaattaatctggtaactaataaa
acagagaaagcaactgtggacattattatacaaggtgctccagtcattacaaaactctcc
attgagccttctacaacagttcaagaaggagaaaatgtttcaatacattgttctgctgaa
agtaaccctcctcccaagattattttaaggagaaaatctgacaatgcaaacatggggcct
tacagtgccaggagaattcttcttccatctgtggtgttccaaaacggaggagactatgaa
tgtgtagcagaaaataagtttgggaacagtaaaagtgaaatcacgcttaatgtgaaatat
ggaccaaagaatacaatgatcactgttatccctactgctgctcttaaagaaggagaaact
gtgacaatgaaatgtacaagttctggtaatccagctcctgtgatctcctggaaaaaaaag
aaggccagcggggagtccgagaaaatttctaaaaatgcaactttaactatacagaacttg
aaaagtcaagatctgggactttatgaatgtgaagcttataatcagtatggcaaggaagaa
aaagctgtgaaattatatgttcaagcaagattggaagaaccagatcagatgatagcagtg
attattgcattctcatctgtagcagcagtagcggtacctgcagtcgcaattttgatctat
gtgtcaagacaggcaaagatcaatggatcctacagtcttgtaaaagcactcaggttgaaa
gtttga
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