Hirundo rustica (Barn swallow): 120756992
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Entry
120756992 CDS
T09369
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04136
Autophagy - other
hrt04140
Autophagy - animal
hrt04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120756992 (ATG16L1)
04136 Autophagy - other
120756992 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120756992 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hrt04131
]
120756992 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
hrt03029
]
120756992 (ATG16L1)
Membrane trafficking [BR:
hrt04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120756992 (ATG16L1)
Others
Rab GTPases of specific organelles
Auto phagosome
120756992 (ATG16L1)
Mitochondrial biogenesis [BR:
hrt03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120756992 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG16
WD40
ANAPC4_WD40
eIF2A
NBCH_WD40
Ge1_WD40
HTH_6
WD40_like
PALB2_WD40
Lipoprotein_6
HEF_HK
Fez1
Motif
Other DBs
NCBI-GeneID:
120756992
NCBI-ProteinID:
XP_039929862
LinkDB
All DBs
Position
10:6768442..6789116
Genome browser
AA seq
624 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAEELRRRDRLQRQAFEEIIAQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHEISPGHDSTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVETRDDD
IEVLADETSDTAEETSPVRAVSRTSSKRLSQPAGGLLDSISNIFGLSESPLLGHQSSDTA
RRRSLSSFPAPQDNAEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRTESIVKELELLGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVK
QTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAV
TWSPAGAHVVSVDKGNKAVLWAEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgccgggtttcccccctggaagcggcacatcgcggaggag
ctgcggcggcgggaccggctgcagcgccaggctttcgaggagatcatcgcccagtataac
aagctgctggagaagtcagaccttcatgcagtgctggctgataagcttcaagcagaaaaa
tatgacatgcagagcagacatgagatcagcccaggacatgatagcacgtggaacgacgct
cagctgcaggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcac
aagaaacgtggcgagctggcccagtctgtaattgatctgaacaaccaaatgcagcagaag
gacaaagagatgcagatgaatgaagccaagattgcagagtatttgcaaaagatttctgaa
ctggaaacagagtgccaggaattgcgtagcaaactgcaagatcttgagcgagctaatcag
acacttaaagatgaatatgatgctctccagatcaccttcaatgctttggaggagaaacta
aggaaaactactgaagacaaccaggagctggtctcacgttggatggcagagaaagcacaa
gaagccaatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctg
cagaaggagctggcagaagctgccaaggagcccttgcccgttgaaaccagggatgatgat
atcgaagtgcttgcagatgaaacctccgacacagctgaggaaacctctccggtgagagct
gtcagccggacgtccagtaagcgactctcccagccagctggaggccttctggactctatc
agtaatatctttggtctgtctgagtctccccttttgggacatcagtcttctgatactgcc
aggaggcgttctctgtcctcattccctgcaccccaggataatgcagagccacatccaggt
gccagtaaagaagtgagagtgcccactactgccatatgtgtctttgatgcacatgatggg
gaggtgaatgcggtgcagttcagccctggctctcggttactagctacaggaggcatggac
cggagggttaagctttgggaagtcttgggagataggtgcgagcccaaaggttccctctct
ggcagtaatgctgggattacaagcatagagtttgatagtgctggttcttacctcttagca
gcttcaaatgactttgccagtagaatctggacggttgatgacaatcgattacggcacacc
ctgacaggtcacagtggtaaagttctgtcagccaagttcttgctggacaatgcacgtatt
gtttcgggaagtcacgaccggaccctcaagctctgggacctccgcagcaaagtttgtata
aaaacagtgtttgcaggatctagctgcaatgacattgtgtgtactgagcagtgtgtaatg
agtggacattttgataagaagattcgtttttgggacatcaggactgaaagcattgtaaaa
gaactggagttgcttggaagaatcacagctctggacctgaacccggagagaacagagctt
ctgacctgttcccgtgatgatctgctcaagatcattgatctgcgggtcagtgcggtcaag
cagacgttcagtgcccagggattcaaatgtggctctgactggacaagagttgtgttcagc
cctgatggtaactatgtggctgctggctcagctgatggggccctctacatttggaatgtg
cttactgggaaattggagaggacgcttgcaaagcatcacagttcttctatcaatgcagtc
acgtggtccccagcgggtgcccacgtggtcagtgtggacaaaggaaacaaggctgtgctg
tgggctgagttttga
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