Hirundo rustica (Barn swallow): 120756992
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Entry
120756992 CDS
T09369
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04136
Autophagy - other
hrt04140
Autophagy - animal
hrt04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120756992 (ATG16L1)
04136 Autophagy - other
120756992 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
120756992 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hrt04131
]
120756992 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
hrt03029
]
120756992 (ATG16L1)
Membrane trafficking [BR:
hrt04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
120756992 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
120756992 (ATG16L1)
Mitochondrial biogenesis [BR:
hrt03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
120756992 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
WD40_Gbeta
Beta-prop_WDR3_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_EIPR1
CFAP251_N
Beta-prop_VPS8
eIF2A
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_NOL10_N
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_ACSF4
Beta-prop_HPS5
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Ge1_WD40
Tricorn_2nd
Beta-prop_WDR41
INO80F
HEF_HK
ZapB
DUF8181
HTH_6
PALB2_WD40
Peptidase_M15_4
CC_Bre1
DUF6383
BEGAIN_coil
Motif
Other DBs
NCBI-GeneID:
120756992
NCBI-ProteinID:
XP_039929862
LinkDB
All DBs
Position
10:6768442..6789116
Genome browser
AA seq
624 aa
AA seq
DB search
MASGLRAAGFPPWKRHIAEELRRRDRLQRQAFEEIIAQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHEISPGHDSTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVETRDDD
IEVLADETSDTAEETSPVRAVSRTSSKRLSQPAGGLLDSISNIFGLSESPLLGHQSSDTA
RRRSLSSFPAPQDNAEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRTESIVKELELLGRITALDLNPERTELLTCSRDDLLKIIDLRVSAVK
QTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAV
TWSPAGAHVVSVDKGNKAVLWAEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgccgggtttcccccctggaagcggcacatcgcggaggag
ctgcggcggcgggaccggctgcagcgccaggctttcgaggagatcatcgcccagtataac
aagctgctggagaagtcagaccttcatgcagtgctggctgataagcttcaagcagaaaaa
tatgacatgcagagcagacatgagatcagcccaggacatgatagcacgtggaacgacgct
cagctgcaggaactggcccagctgaagataaagcaccaagaggagctgactgagctgcac
aagaaacgtggcgagctggcccagtctgtaattgatctgaacaaccaaatgcagcagaag
gacaaagagatgcagatgaatgaagccaagattgcagagtatttgcaaaagatttctgaa
ctggaaacagagtgccaggaattgcgtagcaaactgcaagatcttgagcgagctaatcag
acacttaaagatgaatatgatgctctccagatcaccttcaatgctttggaggagaaacta
aggaaaactactgaagacaaccaggagctggtctcacgttggatggcagagaaagcacaa
gaagccaatcgtttgaatgcagaaaatgaaaaggattcaaggagacgccaggccaggctg
cagaaggagctggcagaagctgccaaggagcccttgcccgttgaaaccagggatgatgat
atcgaagtgcttgcagatgaaacctccgacacagctgaggaaacctctccggtgagagct
gtcagccggacgtccagtaagcgactctcccagccagctggaggccttctggactctatc
agtaatatctttggtctgtctgagtctccccttttgggacatcagtcttctgatactgcc
aggaggcgttctctgtcctcattccctgcaccccaggataatgcagagccacatccaggt
gccagtaaagaagtgagagtgcccactactgccatatgtgtctttgatgcacatgatggg
gaggtgaatgcggtgcagttcagccctggctctcggttactagctacaggaggcatggac
cggagggttaagctttgggaagtcttgggagataggtgcgagcccaaaggttccctctct
ggcagtaatgctgggattacaagcatagagtttgatagtgctggttcttacctcttagca
gcttcaaatgactttgccagtagaatctggacggttgatgacaatcgattacggcacacc
ctgacaggtcacagtggtaaagttctgtcagccaagttcttgctggacaatgcacgtatt
gtttcgggaagtcacgaccggaccctcaagctctgggacctccgcagcaaagtttgtata
aaaacagtgtttgcaggatctagctgcaatgacattgtgtgtactgagcagtgtgtaatg
agtggacattttgataagaagattcgtttttgggacatcaggactgaaagcattgtaaaa
gaactggagttgcttggaagaatcacagctctggacctgaacccggagagaacagagctt
ctgacctgttcccgtgatgatctgctcaagatcattgatctgcgggtcagtgcggtcaag
cagacgttcagtgcccagggattcaaatgtggctctgactggacaagagttgtgttcagc
cctgatggtaactatgtggctgctggctcagctgatggggccctctacatttggaatgtg
cttactgggaaattggagaggacgcttgcaaagcatcacagttcttctatcaatgcagtc
acgtggtccccagcgggtgcccacgtggtcagtgtggacaaaggaaacaaggctgtgctg
tgggctgagttttga
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