Hirundo rustica (Barn swallow): 120757022
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Entry
120757022 CDS
T09369
Symbol
SNED1
Name
(RefSeq) sushi, nidogen and EGF-like domain-containing protein 1 isoform X1
KO
K24470
insulin-responsive sequence DNA-binding protein 1
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
hrt04990
]
120757022 (SNED1)
Domain-containing proteins not elsewhere classified [BR:
hrt04990
]
EGF-like domain-containing proteins
hEGF / cEGF domain-containing proteins
120757022 (SNED1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
NIDO
hEGF
EGF_TEN
fn3
EGF_2
EGF_CA
Fn3_Dep-1_4th
Ig_DSCAM-DSCAML_C
EGF_3
cEGF
Motif
Other DBs
NCBI-GeneID:
120757022
NCBI-ProteinID:
XP_039929954
LinkDB
All DBs
Position
10:4072430..4094528
Genome browser
AA seq
1536 aa
AA seq
DB search
MRVLAGWAVLVALGEWLWAGGEVPLGDFYPFGPAQGDAATRKQDDGGSELRPLSIPFPFF
GAGHTGLYVNNNGIISFLKEVSQFTPVAFPISKDRRVVAAFWADVDNRRAGEIYYRESTE
QPILERASRDIAQYFPEFPGFSAQWVFIATWYRVTFFGGSSFSPVNTFQIVLITDGKLSF
TIFNYESITWTTGMHASSGGDFAGLGGIAAQAGFNAGDGKRYFNIPGSRTDDIADVEMTT
NVGIPGRWVFRIDDAQVQVGGCSNTTSVCLTLRPCLNGGKCIEDCITGNPSYTCSCLAGF
TGKRCHVDVDECLSQPCQNGATCLNGAGRFTCRCPPGFRGNNCETESPCENKVCQNGGSC
QVVNRTAVCLCQSGYTGVDCQTEVNECESSPCLNGGHCIDLVDNYTCVCLEPYVGQRCET
DSSSCEDRSCQNRQTCNYIRPGRYICTCSPGYYGSNCQYGGPRVPGACLSHPCQNAGSCL
ETEQGYVCECQEGYTGQDCRDQLSEGCECRNGGSCLEGNVTVCQCLPGYFGLLCEFEVTT
TPCNMNTQCPDGGYCMEYGGSYLCVCHTNYGTNHTMPSPCDSEPCLNGGSCKVHDDSYVC
ECPQDFLGMHCEKAKPRLCSAGPCRNGGTCREADGEYHCTCPYRFTGKHCEIGKPDPCAS
GPCQNGGTCFHYIGKYKCDCPPGYTGRHCEMVPSPCFLSPCQNGATCEDLGGGYACTCSV
GYVGKRCQFEVDCGIPSEVKHAQASFNSTKVGALAEYQCEPGYILSQHNHPRVCRVPGVW
SDPPECDEIDECQSQPCLNGGQCKDRVSAFLCLCEPGYTGYHCELDVDECQSEPCKNSGT
CQDLPGSFACYCPEGFLGTQCETEVDACESDPCRNGGECESYGGSYLCVCPEGFFGYHCE
TASDPCFSSPCGSRGYCLPSNGTHSCTCKVSYTGKNCEKELLPPTSLKVERVEDTGVLIS
WHPPEDAAARQLIDGYAVTYVSLDGSYRRTDFVDRSRSAHQLRALTSGRAYNISVFSVKR
NVNNKNDISRPVMLTTRTRPRPVEGFEITNVTASAITVQWALHRLQHSTVSRVRVSIRQM
GDLAGRTVELNSSVAKYTFLDLQPGERYIIHVTTLSGLGVEDHPSESLATAPFHVWTRPL
PPQNLTASHVTATSVSMAWEQPPVGTMEGYIINVTTAQSVKSRYVPNGKLVSYTVRDLLP
GQRYHLSLTAVQNTEQGQVHSEPIHLYVTTLQRDGAPERRWSQAGHPRVLRNRLPPAFLP
ELRLLADHDTAEEPSPAPRFTELVDGRGRISARFGTALGKPITLKTQPEAPVKLENTEVS
SWDSLALQLREAKSKREGQNCSKNPCRNGGTCTREDESYHCACRPGFKGRVCQLGPGEST
RYTRTSATRRAVRAPLLRGRAAGTARSSTLNALSCDAAQEDVAGGVPRGDTQAGAGLLEG
RRHDQGCQCLVLACEQWPGRLGLTALSSLLFQKAKQQSHTEEAVEVSTCCSPPQGQAGAV
LQGVGEMGAGQGTTLVTPPCRGGGRVMAEDSWLWLG
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtcctggcaggctgggccgtgctggtggcgttgggagagtggctgtgggccggt
ggggaggtgccgctgggggacttctaccccttcgggccggcccagggcgacgccgccacg
cggaagcaggacgacggtggctccgagctccggccgctctccatccccttccccttcttt
ggtgcggggcacaccggcctctatgtaaataacaatgggatcatctcattcctgaaggag
gtctcccagttcacgccggtggccttccccatctccaaggaccggcgtgtggttgctgct
ttctgggcggatgtggataatcggcgggcgggagaaatatattaccgggagagcacggag
cagcccatcctggagagagcgagcagggacattgcccagtatttccctgagttcccaggg
ttttctgcacagtgggtcttcattgcaacctggtaccgagtcaccttcttcgggggcagc
tccttttcaccagtaaacactttccagattgtcctcatcacggatggcaagctttccttc
accatctttaactatgagtccatcacctggaccacgggtatgcacgccagcagtgggggg
gactttgctgggctcggtggcatcgcggcacaggcaggttttaacgctggtgatggaaaa
cgctacttcaacatccccggatcccgcaccgatgacatcgctgacgtggagatgacgaca
aatgtgggtatccccgggcgctgggtgttcagaatcgatgatgcccaggtgcaagtgggg
ggctgcagcaatacaacctctgtctgcctgacactgcggccctgcctgaatggggggaag
tgtatcgaggactgcatcacagggaacccctcctacacctgctcctgcctggccggtttt
actgggaagaggtgccacgttgatgtggatgagtgcctctcccagccatgtcagaacgga
gccacctgcctcaacggtgccggcaggttcacctgcaggtgcccaccaggcttcagaggc
aacaactgcgagactgaatcaccatgtgagaacaaggtgtgccagaacggtgggagttgc
caggtggtgaacaggacagcagtgtgcttgtgccagtcggggtacacaggggtggactgc
caaacagaggtgaacgaatgtgagtccagcccatgcctgaacggcgggcactgcattgac
ctggtcgataactacacctgtgtgtgcctggagccctatgtgggacagcgctgcgagaca
gattcatcttcctgcgaggaccggagttgccagaaccggcagacgtgcaactacatccgc
cctggccgctatatctgcacctgctccccgggttattacggcagcaactgccagtatggt
gggccccgcgtgcctggtgcctgtctctcccacccgtgccaaaacgcaggcagctgtctg
gagacagagcagggctatgtctgtgagtgccaggagggctacactggacaggactgtcga
gaccagctctctgagggctgtgagtgtcgtaatgggggcagttgtctggagggaaatgtc
accgtctgccagtgccttcctgggtattttggtctcctctgtgaattcgaagtcaccacg
acgccgtgcaacatgaacacgcagtgcccggacggtgggtactgcatggagtacggcggg
agctacctctgtgtctgccacaccaactacggcaccaaccacacgatgccgtccccctgc
gactcagagccctgcttgaatggggggtcctgcaaggttcatgatgactcgtacgtctgc
gagtgtcctcaagacttcctcggcatgcactgcgagaaagccaagcctcggctctgcagc
gcggggccctgccgcaacgggggcacctgcagggaggcggatggcgagtaccactgcacc
tgcccctaccgcttcaccggcaagcactgcgagatcggtaagccggacccctgcgcgtcg
gggccctgccagaacggaggcacctgtttccactacatcggcaagtacaagtgtgactgt
cccccaggatacaccggccggcactgcgagatggtgccctccccttgctttcttagcccc
tgccagaatggggctacctgcgaggaccttggcgggggctatgcttgcacctgctccgtg
ggctatgtagggaagcgctgccagtttgaggtcgactgtggcatccccagtgaggtgaag
catgcccaggcttctttcaactccaccaaggtgggtgcactggctgaataccagtgtgag
ccgggctacatcctcagccagcacaaccatccccgtgtctgccgtgtgccgggtgtctgg
agcgacccccccgaatgtgacgagatcgacgagtgccagtcgcagccctgcctgaatggt
ggccagtgcaaggatcgtgtctctgccttcctgtgcttgtgtgagccaggttacactggc
taccactgcgagctggatgttgatgagtgccagtcggagccctgcaagaacagtgggacc
tgccaagacctccccgggtcctttgcttgctactgtcctgagggcttcctggggacccag
tgcgagacagaagtggatgcctgtgagtcagacccttgccgaaacggaggggagtgtgag
agctacgggggctcctacctctgtgtgtgcccagagggtttcttcggctaccactgtgag
acagccagtgacccgtgcttctccagcccctgtgggagcagaggctactgcctgcccagc
aatggcacccacagctgcacctgcaaagtcagctacacaggcaagaactgcgaaaaagaa
ttgctgccaccaacctcattaaaggtggaaagggtggaggacactggtgtgttgatttct
tggcacccacctgaggacgcagctgccaggcaactcattgacggctacgccgtgacgtac
gtatccctcgacggctcttaccgcaggacagattttgtggaccgaagtcgttctgcccac
caattgcgggcactaacctccggcagagcctacaatatttctgtcttttcagtcaaacgc
aacgtgaacaacaagaatgatatcagcaggcccgtcatgctcaccacgcgcactagaccg
cgtccggtggaaggctttgagatcacgaatgtcactgccagcgccatcacggtgcaatgg
gctctccaccgactccagcattccactgtcagtagggtgagggtctccatccgccagatg
ggggacctggcaggccgcaccgtggagctgaacagcagcgtggccaagtacaccttcctg
gacctgcaaccaggagagagatatatcatccatgtcacaacgctgagcggcctgggagtg
gaagaccacccctccgagagcctggccacagccccttttcatgtgtggacaaggcctctc
cccccacaaaacctcaccgcctcccacgtcaccgccacctctgtgtccatggcgtgggag
cagccgcccgttggcaccatggaggggtacatcatcaacgtcaccacggcccagagcgtc
aagagccgctacgtgcccaacgggaaactcgtgtcctacacggtgcgggacctgctgcct
gggcagcgctaccacctgtccttgacagctgtgcagaacacggagcagggccaggtgcac
agcgagcccatccacctctacgtcaccaccttgcagagggatggagctccagagagacgg
tggagccaagctgggcacccccgggtactgcgcaacaggctgcccccagctttcctgccc
gagctccgcctgctggcagatcatgacacagctgaggagccctcgccagcccccaggttc
acggagctggtggatggcagagggaggatcagcgccaggtttggcactgcgctgggaaaa
cccatcactctgaagacacagccagaggctccagtgaagctggagaacacagaggtgtcc
agctgggacagtctggcactgcagctgcgtgaggcaaagagcaagagagaggggcagaac
tgctccaagaatccctgcaggaatggaggcacctgtacccgagaggacgagtcctaccac
tgtgcctgccgcccaggcttcaagggccgggtctgccagctgggtccaggagagtctaca
aggtacaccaggacatctgctacaaggagagctgtgagagcaccgcttctgagaggacga
gcagcaggtacagcccgcagcagcacactgaatgcgctgtcctgtgatgctgcacaggag
gatgtggctggtggtgtgccccgtggggacacccaggctggggctgggctgctggagggg
cgcagacacgaccaaggctgccagtgccttgtgcttgcctgtgagcaatggccagggcgc
ttggggctgacagcgctgtcctcccttctcttccagaaagccaagcaacagtcacacact
gaagaagccgtagaagtaagtacctgctgcagccctcctcaggggcaggcaggggcagtt
ctgcagggagtcggggagatgggtgcaggccagggcacaaccctggtcacgccgccgtgt
cgagggggtgggagggttatggctgaggactcctggttgtggctggggtag
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