Hirundo rustica (Barn swallow): 120757321
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Entry
120757321 CDS
T09369
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X3
KO
K06237
collagen type IV alpha
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04510
Focal adhesion
hrt04512
ECM-receptor interaction
hrt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120757321 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120757321 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120757321 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrt04147
]
120757321 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
hrt00536
]
120757321 (COL4A4)
Exosome [BR:
hrt04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120757321 (COL4A4)
Glycosaminoglycan binding proteins [BR:
hrt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120757321 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120757321
NCBI-ProteinID:
XP_039930501
LinkDB
All DBs
Position
10:complement(9971551..10040528)
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDSFEWIKWLITAAWWLLIVFSTQGIDGGGYAYIDSCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGPTGPAGLPGEKGQRGENGKPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKHGLDGCNGSRGDPGFPGENGYMGPRGPYGIPGQKGEKGNSVYVSRFGKGLP
GERGDPGPPGVPGPRGPRGTTGPSGYPGHPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DIGMPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGYRGPRGPKGTLGRGEKGEKGLPGF
PGLRGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLPPIK
GPRGDPGFPGPVGEMGSVGPIGPSGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGLPGQPGRQGLPGLPSIICTDRGIPGEPGAKGQIGLPGRKGAKGE
KGSQGLCSCSAGPPGPRGVTGPPGTEGRKGQMGYPGRHGEKGDPGLSGAVGSPGLPGTPG
SAGQHGEKGEKGDPGRVRIKGLKGERGPTGLPGFPGQRGLDGRDGELGLPGEKGAEGDSG
VAIPGDKGFLGLPGPPGVKGQMGLPGLGLPGPPGARGSPGDFGDMGNVGPPGPKGQKGET
VCITSPYPGSPGPPGFKGVQGQKGLKGLPGHPGPNGFDGQKGHRGRPGAGIPGPEGFRGT
AGDPGDEGERGSTIDGKNGLPGPPGTDGQKGLPGDTTYGPPGIPGTRGLPGPPGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGIKGLKGSLGSQGLPGPPGSRGPPGLPGNKGPIGFPGETG
SKGIQGPRGFPGLPGIQGPTGIFGVKGEEGKMGLPGPSGECGDMGMKGERGPPGDSGYVN
LRLEKGQMGDPGFPGEHGLRGERGEKGNTGFRGTRGFPGKNGVPGLPGDQGDTGVMGFPG
SRGLPGPKGLQGMTGFQGEPGDQGDVGLPGNPGYPGLPGLKGCKGDRGDPTPLLGTRGRK
GPPGDPGLPGLRGFPGEKGSPGVQGQPGRPGSKGDPGYPGPPGLPGATGPQGLPGEPGEE
GKPGILGPPGLQGLPGFQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSEAGPPGYPGEIG
PKGDRGEPGWPGISIPGSPGERGFPGFPGRRGPVGPAGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGTPGPPGETIFVQGDPGDTGIRGAPGNPGPRGQQGARGPPGSQGREGPKGPMG
VHGPQGPPGASGQPGDQGFPGRPGPRGPTGFIGDPGEPGKVDDSCPTIPGPPGEAGQRGE
DGSAGLPGPIGHPGPQGIKGEEGSRGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGQ
TGVPGQPGPQIRSASGFLLVHHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPTAPLSEEEIRPYISRCAVC
EAPAQAVALHSQDQSIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPVSGTLKDGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaatggattaaatggcttatcacagctgcctggtgg
ctgctgattgttttttcaactcaaggaattgatgggggaggatatgcatatattgattca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaaggggtcag
cctggtgagctgggagctcaaggtccaattgggtccttgggacctacaggaccagctggt
ttgccaggggagaaaggacagagaggtgagaatgggaagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccgggatttcctggtttagacggtgttcctggcctc
ccaggaagggaaggacccagaggcaagcatggtttggatggctgcaatggctcaagggga
gacccaggatttccaggagagaacggttatatggggccaagaggtccttatggaattcca
gggcaaaaaggagaaaaaggaaattcagtgtatgtttcacgttttggaaaaggacttcca
ggagagagaggtgaccctggaccccctggcgtgcctggacctagagggccaagaggtaca
acgggcccatctggatacccaggccatccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccagggattggagtggatggacaaaaaggggagccgggt
gacatcggaatgcctgggccgcctgggtcaccgctgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagagggcca
cgtggacccaaaggcacacttgggagaggagaaaagggtgaaaaaggccttcctggattc
cctggattgcggggtcatcctggttcttatggacctgctggttttcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcatacagggggatcca
ggagagaaagggcccccaggtcctcctggagctgttggaactccactgcctcctataaaa
ggtccacgaggagatcctggatttccaggtcccgttggtgaaatggggtcagttggaccc
attggtccatcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggtgaccctggtttgcctggg
acaggtgaattaatcccaggaagaccgggatttcctggaccaccaggcctaccagggcag
ccaggaagacaaggcttacctggactacccagtataatctgtactgacagagggatccct
ggagaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgcaaaaggagag
aagggaagccaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtgtgaca
ggacctccaggtactgaaggaaggaaaggacagatgggataccctggaagacatggagaa
aagggcgacccaggcttatctggtgcagtgggatcaccaggactccctgggactcctggt
tctgctggacagcatggggaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggattaaaaggtgaaagaggaccaactgggcttccaggatttccaggccaaagaggtctt
gatggcagagatggagaactaggattgccaggggaaaaaggagctgagggtgattctgga
gtagcaattccgggtgataaaggattccttgggctgccgggacctcctggggtaaaaggc
cagatgggattgcctggtttggggcttcctgggcctccaggagccagaggtagccctgga
gactttggtgatatgggtaatgttgggccacctggcccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaagcccaggtcccccaggctttaaaggtgttcaa
ggacaaaagggtttaaaaggactccctgggcatcctggaccaaatggctttgatgggcaa
aaagggcatagaggaaggccaggagcaggaatccctgggccagaaggctttcgaggcaca
gctggtgatcctggtgatgaaggtgaaagaggatctacaattgatggcaaaaatggcctt
ccaggtccacctggcacagatggccagaaaggtcttccaggtgacaccacgtacggcccc
ccaggaatcccaggcaccaggggactgccaggaccccctggtgcacagggagcaaggggt
aatccaggcattcctggacttcaaggacaacctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatgtaggagcaccaggctgtccaggcttccctggctca
ccatgtgtcccaggcttacctggaccacctgggctcagaggtgtcatgggcctgccagga
cctcaaggcttaccaggctttaaaggtcaaaggggagacaggggcctggctgggccacct
ggaatcaaaggtctcaaaggctctctgggctcacaaggtctcccaggtcctccaggctca
cgaggtcccccaggacttccaggcaataaaggacccattggcttcccaggagaaacagga
agcaaaggcattcaaggaccccggggattcccaggactcccaggaatacaaggcccaacg
ggaatttttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgtggagatatgggaatgaaaggtgaaagggggcctccaggagacagcggctatgttaat
ctccgtcttgagaaaggacaaatgggggacccagggtttcctggtgagcatggactgaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcacacgaggatttccagggaag
aatggtgttccaggactgccaggtgaccaaggtgacactggagtgatggggtttccagga
tcacggggtttgcctggaccaaagggccttcaaggaatgacaggttttcaaggagaacca
ggtgaccagggtgatgttggcttaccaggaaaccctggatatccaggactgcctggcctg
aaaggatgtaaaggtgacagaggtgacccaactcctctgcttggcacacgcggtcggaaa
gggcctccaggagatccaggactgccagggcttcgtggatttccaggggagaagggttca
ccaggtgtccaaggacagcctggaagaccaggatccaagggtgaccctggatatccaggg
ccacctggattaccaggagctacaggtcctcaaggattgccaggagagcctggagaagaa
ggaaaacctggaattttgggacctccaggattgcaagggttacctggattccaaggcaga
aaaggtcttcctggactgcctggactggatggcttggatggactgaaaggtcagaagggt
tctgcaggagctccaggtcagagtgaggcagggcccccaggatacccaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggctcccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacctgctggacctatg
ggaagatctcctgatagtgcttcccctggtcctccaggtgatcaaggattacctggttta
gacggcatcagaggtgatcctgggactcctggtcctcctggggagactatctttgtgcaa
ggagatccaggtgatactggcattcgaggggcaccaggtaatcctgggccacgaggacaa
cagggagccagaggccctccagggagccaaggaagagaaggcccaaagggtcctatgggg
gtgcatggcccacagggtccacctggtgcttcaggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtttcataggtgatcctggggagccaggaaaa
gtagatgattcatgccctacaatcccagggcctcctggggaagcagggcaaagaggagag
gacggctctgcaggattaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcacgtggcctgccaggtcaggatgggttacctggagcacctggaccaccg
ggtgaccaagggagccgaggagagcaaggatatgctgggccccaaggtccacctggccag
actggtgtcccaggacaaccaggcccccagattagatctgcaagtggattcctgctcgtc
catcacagtcagtcagacagagaaccgctctgcccacaggggatgccaaagctatggact
ggctatagcctgctgtacctggaaggacaagagaaagcccataatcaagatcttggcctg
gcaggatcctgcctgcctgtgtttagtaccatgccctttgcctactgcaacatcaaccag
gtgtgttactacgccagccgcaatgacaagtcctactggctgtccagcgctgctccgctg
ccgacggcgccgctgtccgaggaggagatccggccgtacatcagcagatgcgctgtgtgc
gaggccccggcacaggcagtggcactgcacagccaggaccagtccattcccccctgcccg
ctcaactggaggagcctttggattggatactcttttttgatgcacactggatctggtgac
cagggtgggggacagtcccttatgtcacccggaagctgcctggaagacttcaggtcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttctttgctaatgaatacagt
ttctggctgaccaccgtgatgcctgagctgcagtttgcatcagcccccgtgtcagggact
cttaaagacggacaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcat
ggctaa
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