Hirundo rustica (Barn swallow): 120757321
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Entry
120757321 CDS
T09369
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X3
KO
K06237
collagen type IV alpha
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt04382
Cornified envelope formation
hrt04510
Focal adhesion
hrt04512
ECM-receptor interaction
hrt04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120757321 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120757321 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120757321 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120757321 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrt04147
]
120757321 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
hrt00536
]
120757321 (COL4A4)
Exosome [BR:
hrt04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120757321 (COL4A4)
Glycosaminoglycan binding proteins [BR:
hrt00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120757321 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120757321
NCBI-ProteinID:
XP_039930501
LinkDB
All DBs
Position
10:complement(9971551..10040528)
Genome browser
AA seq
1681 aa
AA seq
DB search
MALTKDSFEWIKWLITAAWWLLIVFSTQGIDGGGYAYIDSCGGQDCSVCRCFPEKGSRGQ
PGELGAQGPIGSLGPTGPAGLPGEKGQRGENGKPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGREGPRGKHGLDGCNGSRGDPGFPGENGYMGPRGPYGIPGQKGEKGNSVYVSRFGKGLP
GERGDPGPPGVPGPRGPRGTTGPSGYPGHPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DIGMPGPPGSPLLVGPPGAQLFKGQKGQKGLPGVTGYRGPRGPKGTLGRGEKGEKGLPGF
PGLRGHPGSYGPAGFPGMKGETGFAGFPGQPGYPGIQGDPGEKGPPGPPGAVGTPLPPIK
GPRGDPGFPGPVGEMGSVGPIGPSGLLGRPGYDGTSLPGLPGVSGAPGPQGFQGDPGLPG
TGELIPGRPGFPGPPGLPGQPGRQGLPGLPSIICTDRGIPGEPGAKGQIGLPGRKGAKGE
KGSQGLCSCSAGPPGPRGVTGPPGTEGRKGQMGYPGRHGEKGDPGLSGAVGSPGLPGTPG
SAGQHGEKGEKGDPGRVRIKGLKGERGPTGLPGFPGQRGLDGRDGELGLPGEKGAEGDSG
VAIPGDKGFLGLPGPPGVKGQMGLPGLGLPGPPGARGSPGDFGDMGNVGPPGPKGQKGET
VCITSPYPGSPGPPGFKGVQGQKGLKGLPGHPGPNGFDGQKGHRGRPGAGIPGPEGFRGT
AGDPGDEGERGSTIDGKNGLPGPPGTDGQKGLPGDTTYGPPGIPGTRGLPGPPGAQGARG
NPGIPGLQGQPGTPGFPGAKGFRGPEGDVGAPGCPGFPGSPCVPGLPGPPGLRGVMGLPG
PQGLPGFKGQRGDRGLAGPPGIKGLKGSLGSQGLPGPPGSRGPPGLPGNKGPIGFPGETG
SKGIQGPRGFPGLPGIQGPTGIFGVKGEEGKMGLPGPSGECGDMGMKGERGPPGDSGYVN
LRLEKGQMGDPGFPGEHGLRGERGEKGNTGFRGTRGFPGKNGVPGLPGDQGDTGVMGFPG
SRGLPGPKGLQGMTGFQGEPGDQGDVGLPGNPGYPGLPGLKGCKGDRGDPTPLLGTRGRK
GPPGDPGLPGLRGFPGEKGSPGVQGQPGRPGSKGDPGYPGPPGLPGATGPQGLPGEPGEE
GKPGILGPPGLQGLPGFQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSEAGPPGYPGEIG
PKGDRGEPGWPGISIPGSPGERGFPGFPGRRGPVGPAGPMGRSPDSASPGPPGDQGLPGL
DGIRGDPGTPGPPGETIFVQGDPGDTGIRGAPGNPGPRGQQGARGPPGSQGREGPKGPMG
VHGPQGPPGASGQPGDQGFPGRPGPRGPTGFIGDPGEPGKVDDSCPTIPGPPGEAGQRGE
DGSAGLPGPIGHPGPQGIKGEEGSRGLPGQDGLPGAPGPPGDQGSRGEQGYAGPQGPPGQ
TGVPGQPGPQIRSASGFLLVHHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGL
AGSCLPVFSTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPTAPLSEEEIRPYISRCAVC
EAPAQAVALHSQDQSIPPCPLNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSA
PFIECQGQRGTCQFFANEYSFWLTTVMPELQFASAPVSGTLKDGQEQRKKISRCQVCLKH
G
NT seq
5046 nt
NT seq
+upstream
nt +downstream
nt
atggcattaacaaaggattcatttgaatggattaaatggcttatcacagctgcctggtgg
ctgctgattgttttttcaactcaaggaattgatgggggaggatatgcatatattgattca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaaggggtcag
cctggtgagctgggagctcaaggtccaattgggtccttgggacctacaggaccagctggt
ttgccaggggagaaaggacagagaggtgagaatgggaagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccgggatttcctggtttagacggtgttcctggcctc
ccaggaagggaaggacccagaggcaagcatggtttggatggctgcaatggctcaagggga
gacccaggatttccaggagagaacggttatatggggccaagaggtccttatggaattcca
gggcaaaaaggagaaaaaggaaattcagtgtatgtttcacgttttggaaaaggacttcca
ggagagagaggtgaccctggaccccctggcgtgcctggacctagagggccaagaggtaca
acgggcccatctggatacccaggccatccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccagggattggagtggatggacaaaaaggggagccgggt
gacatcggaatgcctgggccgcctgggtcaccgctgttagttggacctcctggagctcag
ctgttcaaaggacaaaagggccaaaaaggattacctggggtaacaggatacagagggcca
cgtggacccaaaggcacacttgggagaggagaaaagggtgaaaaaggccttcctggattc
cctggattgcggggtcatcctggttcttatggacctgctggttttcctggaatgaagggt
gaaacaggatttgctggttttcctggacaacctggctatccaggcatacagggggatcca
ggagagaaagggcccccaggtcctcctggagctgttggaactccactgcctcctataaaa
ggtccacgaggagatcctggatttccaggtcccgttggtgaaatggggtcagttggaccc
attggtccatcaggccttctaggaagaccaggatatgatggaacaagtcttcctggcctg
ccaggagtaagtggggcaccaggacctcaaggttttcaaggtgaccctggtttgcctggg
acaggtgaattaatcccaggaagaccgggatttcctggaccaccaggcctaccagggcag
ccaggaagacaaggcttacctggactacccagtataatctgtactgacagagggatccct
ggagaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgcaaaaggagag
aagggaagccaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtgtgaca
ggacctccaggtactgaaggaaggaaaggacagatgggataccctggaagacatggagaa
aagggcgacccaggcttatctggtgcagtgggatcaccaggactccctgggactcctggt
tctgctggacagcatggggaaaaaggagagaagggtgatccaggaagagttagaataaaa
ggattaaaaggtgaaagaggaccaactgggcttccaggatttccaggccaaagaggtctt
gatggcagagatggagaactaggattgccaggggaaaaaggagctgagggtgattctgga
gtagcaattccgggtgataaaggattccttgggctgccgggacctcctggggtaaaaggc
cagatgggattgcctggtttggggcttcctgggcctccaggagccagaggtagccctgga
gactttggtgatatgggtaatgttgggccacctggcccaaaaggccagaaaggtgaaact
gtctgcattacatcaccatatcctggaagcccaggtcccccaggctttaaaggtgttcaa
ggacaaaagggtttaaaaggactccctgggcatcctggaccaaatggctttgatgggcaa
aaagggcatagaggaaggccaggagcaggaatccctgggccagaaggctttcgaggcaca
gctggtgatcctggtgatgaaggtgaaagaggatctacaattgatggcaaaaatggcctt
ccaggtccacctggcacagatggccagaaaggtcttccaggtgacaccacgtacggcccc
ccaggaatcccaggcaccaggggactgccaggaccccctggtgcacagggagcaaggggt
aatccaggcattcctggacttcaaggacaacctggtaccccaggatttccaggtgccaaa
ggttttagaggcccagaaggtgatgtaggagcaccaggctgtccaggcttccctggctca
ccatgtgtcccaggcttacctggaccacctgggctcagaggtgtcatgggcctgccagga
cctcaaggcttaccaggctttaaaggtcaaaggggagacaggggcctggctgggccacct
ggaatcaaaggtctcaaaggctctctgggctcacaaggtctcccaggtcctccaggctca
cgaggtcccccaggacttccaggcaataaaggacccattggcttcccaggagaaacagga
agcaaaggcattcaaggaccccggggattcccaggactcccaggaatacaaggcccaacg
ggaatttttggtgtaaaaggtgaagaaggaaaaatgggtctacctgggcctagtggagaa
tgtggagatatgggaatgaaaggtgaaagggggcctccaggagacagcggctatgttaat
ctccgtcttgagaaaggacaaatgggggacccagggtttcctggtgagcatggactgaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggcacacgaggatttccagggaag
aatggtgttccaggactgccaggtgaccaaggtgacactggagtgatggggtttccagga
tcacggggtttgcctggaccaaagggccttcaaggaatgacaggttttcaaggagaacca
ggtgaccagggtgatgttggcttaccaggaaaccctggatatccaggactgcctggcctg
aaaggatgtaaaggtgacagaggtgacccaactcctctgcttggcacacgcggtcggaaa
gggcctccaggagatccaggactgccagggcttcgtggatttccaggggagaagggttca
ccaggtgtccaaggacagcctggaagaccaggatccaagggtgaccctggatatccaggg
ccacctggattaccaggagctacaggtcctcaaggattgccaggagagcctggagaagaa
ggaaaacctggaattttgggacctccaggattgcaagggttacctggattccaaggcaga
aaaggtcttcctggactgcctggactggatggcttggatggactgaaaggtcagaagggt
tctgcaggagctccaggtcagagtgaggcagggcccccaggatacccaggagaaattgga
ccaaaaggagacagaggtgaacctggatggcctggtatttctattccaggctcccctgga
gaaaggggattcccaggatttccaggtagaagaggacctgttggacctgctggacctatg
ggaagatctcctgatagtgcttcccctggtcctccaggtgatcaaggattacctggttta
gacggcatcagaggtgatcctgggactcctggtcctcctggggagactatctttgtgcaa
ggagatccaggtgatactggcattcgaggggcaccaggtaatcctgggccacgaggacaa
cagggagccagaggccctccagggagccaaggaagagaaggcccaaagggtcctatgggg
gtgcatggcccacagggtccacctggtgcttcaggacaaccaggagaccaaggttttcca
ggaagacctggtcccagaggtcccacaggtttcataggtgatcctggggagccaggaaaa
gtagatgattcatgccctacaatcccagggcctcctggggaagcagggcaaagaggagag
gacggctctgcaggattaccagggccaataggccaccctggaccccaaggcataaaaggt
gaagaaggatcacgtggcctgccaggtcaggatgggttacctggagcacctggaccaccg
ggtgaccaagggagccgaggagagcaaggatatgctgggccccaaggtccacctggccag
actggtgtcccaggacaaccaggcccccagattagatctgcaagtggattcctgctcgtc
catcacagtcagtcagacagagaaccgctctgcccacaggggatgccaaagctatggact
ggctatagcctgctgtacctggaaggacaagagaaagcccataatcaagatcttggcctg
gcaggatcctgcctgcctgtgtttagtaccatgccctttgcctactgcaacatcaaccag
gtgtgttactacgccagccgcaatgacaagtcctactggctgtccagcgctgctccgctg
ccgacggcgccgctgtccgaggaggagatccggccgtacatcagcagatgcgctgtgtgc
gaggccccggcacaggcagtggcactgcacagccaggaccagtccattcccccctgcccg
ctcaactggaggagcctttggattggatactcttttttgatgcacactggatctggtgac
cagggtgggggacagtcccttatgtcacccggaagctgcctggaagacttcaggtcagca
ccattcatcgagtgccagggccagcggggaacgtgtcagttctttgctaatgaatacagt
ttctggctgaccaccgtgatgcctgagctgcagtttgcatcagcccccgtgtcagggact
cttaaagacggacaagagcagaggaaaaaaatcagtagatgccaggtatgcctgaagcat
ggctaa
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