Hirundo rustica (Barn swallow): 120757632
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Entry
120757632 CDS
T09369
Symbol
SF3B3
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120757632 (SF3B3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrt03021
]
120757632 (SF3B3)
03041 Spliceosome [BR:
hrt03041
]
120757632 (SF3B3)
03036 Chromosome and associated proteins [BR:
hrt03036
]
120757632 (SF3B3)
Transcription machinery [BR:
hrt03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
120757632 (SF3B3)
Spliceosome [BR:
hrt03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
120757632 (SF3B3)
Complex B
120757632 (SF3B3)
Complex C
U2 SnRNP specific factors
120757632 (SF3B3)
Chromosome and associated proteins [BR:
hrt03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
120757632 (SF3B3)
TFTC complex
120757632 (SF3B3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Motif
Other DBs
NCBI-GeneID:
120757632
NCBI-ProteinID:
XP_039931053
LinkDB
All DBs
Position
11:complement(7680934..7709943)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFG
VIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNVFEKIHQETFGKSGCRRIVPGQY
LAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILCCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHVEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTG
DEWYVLVGVAKDLILNPRSVAGGFVYTYKLVNSGEKLEFLHKTPVEEVPAAIAPFQGRVL
IGVGKLLRVYDLGKKKLLRKCENKHIANYICGIQTIGHRVIVSDVQESFIWVRYKRNENQ
LIIFADDTYPRWVTTATLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtacaacctaacgttgcagcgtgccacaggcattagctttgctatccatggc
aatttctcaggaaccaaacaacaggaaattgttgtttcccggggcaagatcctggagctg
ctccgccctgatcccaacacggggaaggttcacactctgctgaccgtggaagtgtttgga
gtcatccggtccctcatggcctttaggctgacgggggggaccaaagactacattgtggtg
ggcagcgattcggggcgcatcgtcattctggagtaccagccctccaagaacgtgtttgag
aagatccatcaggagacctttggcaagagtggatgtcgcagaatcgttccaggccagtac
ttggctgtggacccaaagggccgtgctgtcatgatcagtgccattgaaaagcagaagctg
gtgtatatcctgaacagagatgctgctgctcgactcaccatttcctccccactggaagcc
cacaaggccaataccttggtctaccatgtggtgggagttgatgtggggtttgaaaaccca
atgtttgcttgtctggaaatggattatgaggaagcagacaatgatccaacaggcgaagct
gcagccaacacacagcagacattgacgttttatgaattggacttgggtttgaaccacgtt
gtcaggaaatacagtgagcccctggaagaacatggcaacttcctcattacagttcctggt
ggttctgatggccccagcggggtgctgatctgttctgaaaactatattacttacaaaaac
tttggtgaccagcctgatatcagatgcccaattcctaggagacggaatgacttggatgac
ccagagaggggtatgatttttgtctgctctgctacgcataagaccaagtccatgttcttc
ttcctggcccagacagagcagggagacatcttcaaaattactctggagactgatgaagac
atggtaacagagattcgactgaagtactttgacactgttcctgttgctgctgccatgtgc
gtgctgaaaacagggtttctctttgtggcatctgaatttggaaaccattacctgtaccag
atagctcacctgggggacgatgatgaggagccagagttttcctctgccatgcctcttgag
gaaggagatacattcttttttcagccacggcccctgaagaacctggtgctggtggatgag
ttggacagtttgtctcccattctgtgttgtcagatagcagatttggccaatgaagacaca
ccccagttgtatgtggcttgtggacgggggcccaggtcctccctgagggttctgagacat
ggacttgaggtatctgaaatggccgtctcagagctgcctggtaaccccaatgctgtatgg
actgtgaggagacatgttgaagatgaatttgatgcctacattattgtgtccttcgtaaat
gccacactggtgctgtctattggagagaccgtagaagaagtgactgactctggattcctg
ggtactactcccaccttgtcctgctctcttcttggtgatgatgctttggtacaggtttat
ccagatgggatccgacacatccgagcagataagagagtaaatgaatggaagacaccaggg
aagaaaaccattgtaaaatgtgctgtgaaccaaagacaagtagtgatagcactgactgga
ggagaactggtttactttgagatggacccgtcagggcagctgaatgagtacacggagaga
aaggagatgtcagccgacgtcgtttgcatgagcctggccaatgttccccctggggagcag
cgttcccggttccttgctgttggactggtggacaacactgtcagaattatttcacttgac
ccttcggattgtttgcagcccctgagcatgcaggcgctgcccgcgcagcccgagtcgctg
tgcatcgtggagatgggtggcacagagaagcaggacgagctgggagaaaggggctccatt
ggctttctgtacctgaacattggactgcagaacggtgtgctgctgcgaaccgtcctggac
cctgtcactggtgatctttctgacaccaggaccagatacctcggctcccggcctgtcaaa
ctcttccgtgtccgaatgcaaggccaagaggcggtgctggccatgtcaagccgttcctgg
cttagttattcctatcagtcacgcttccacctgactcccctgtcttacgagacgctggag
tttgcatccggttttgcttctgagcagtgccctgagggcattgtggccatctccacaaac
acattgaggattttggcactggagaagctgggagcagtcttcaaccaggttgccttcccg
ttgcagtacacaccccgaaaatttgtcattcacccagagagcaacaacctgatcatcatt
gagacagaccacaatgcttacactgaggccaccaaggcacagaggaagcagcaaatggct
gaggaaatggtggaggctgcaggtgaggatgagagggagctggctgcagagatggctgca
gcctttctgaacgagaatcttcctgagtccatctttggtgctcccaaggcagggaatggt
cagtgggcctctgttatcagagtgatgaaccccatccagggaaatacattagatctggtc
cagctggagcagaatgaagccgctttcagcgtggccgtgtgccggttctccaacaccggt
gatgagtggtacgtgctggtgggagtcgccaaggacctgattctgaacccacgctcagtt
gctgggggatttgtctacacgtacaagctggtgaatagtggtgagaagctggagtttctg
cacaagaccccggtggaggaggtccctgcagccattgctccattccaaggccgtgtttta
attggggttggaaagctcctgcgtgtatatgacctgggcaagaagaaactgcttcggaaa
tgtgagaataagcacattgccaattacatctgtgggatccaaaccattgggcacagagtg
atcgtctcagacgttcaggagagtttcatctgggtgcgttacaaaaggaatgagaaccag
ctcattatctttgctgatgacacttacccccggtgggtcactactgcaacgctcctggat
tacgacaccgtggctggggcagacaagtttggtaacatctgtgtggtgagattgcctccc
aacaccaatgatgaggtagatgaagatcccacaggcaacaaagctctctgggacaggggc
ctgcttaatggagcatcacagaaggctgaagtgattatgaattatcacgtgggagaaacg
gtgctttccttgcagaagaccacactgattccaggaggctctgaatctcttgtttatacc
accttatcaggggggataggaatcttggtcccttttacttcccatgaggatcatgacttc
ttccagcatgtggaaatgcacttacggtctgagcaccctcctctctgtggacgagaccat
ctcagtttccgctcctactacttcccggtgaagaacgtgattgatggggacctgtgtgag
cagttcaactccatggagcctaacaaacagaagaatgtggccgaggagctggaccggacc
ccacccgaggtgtccaagaagctggaagacatccgcacacgctacgctttctga
DBGET
integrated database retrieval system
