Hirundo rustica (Barn swallow): 120757807
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Entry
120757807 CDS
T09369
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hrt
Hirundo rustica (Barn swallow)
Pathway
hrt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120757807 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrt03019
]
120757807 (EDC4)
Messenger RNA biogenesis [BR:
hrt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120757807 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
120757807 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_EDC4L
Beta-prop_HPS5
Beta-prop_TEP1_2nd
WD40_CDC20-Fz
WD40_Prp19
WDR55
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
120757807
NCBI-ProteinID:
XP_039931364
LinkDB
All DBs
Position
11:6831009..6864165
Genome browser
AA seq
1402 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPLGSGDGPAL
AKPVHRSISLGALQEKQVICLSGDDSSTCLVISAKDVEIVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKEKIQEEILVNIKRPDNTPLNTFRRIIWCPFI
PDDNEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMNIPPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDNLSVEGAQGSGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPSHGSH
EEFAFPDHMADLSTEGLGSEKESAHGSQPDLRRIADLPVPADFLSLSSDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDASLPRASEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVAPGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPAGLPGEVLEPGHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
AQRLPVKDWKVKASPRASPKLKRKGKKDDGDMNQSPRSSNNQVTPEFQDELMCILRSQQR
ELSELRQNQMELLQRLTDHLDAIQSSLMGHVERVIDSQQEQEQRRLDRVLMEGQQRNGQL
QEHLSQQLSQSLSTAVCNRLERTIRDEMKKTMPQCISKSMDPTVSQLSNTIAAKLTAVEG
TLKENITKLMKSKNLTDSVVRATADSLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLEAHLKNKKVREQEVRDPLLNQLRQLISTFQSSTEQLASTIAASVHAE
VQHQLHIIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHM
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
PLSKPARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacccagcacctgcgggacatcctc
aagctggaccggccgggaggttcggtgaatgagaaccagagaccgtcgaattcgtataac
ggggacctgaatgggctgctggtgcctgatccccttgggagcggagatggccccgctttg
gccaagccggtgcatcgcagcatctctctaggagccctgcaggagaaacaagtcatctgc
ctttctggtgacgacagctccacatgcttagtgatatcagctaaagacgtggagatagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaacaaggtgaaaatacag
cctgttgctagatatgactgggagcagaaatactattatggcaatctgatagctgtttca
aactcttacctggcttatgccattagagctgccagcaatggctccgctatggtgcgggtg
ttgagcgtcagcactgctgagaggaccttgctgaagggattcaccggaggcgtggcagac
ctggcctttgctcacctcaactccaaccagctggcctgcctggacgaggctggcaacctt
ttcgtctggcgcctggccatggataaagaaaaaatccaagaggaaatcttggttaacatc
aagcgacctgacaataccccactgaacaccttccgaagaatcatctggtgccctttcatc
ccggatgacaacgaggagagcggggaagagggcagtcagacgttggccttgttgcatgag
gacagggcagaggtgtgggatttggacatcatccgaaccaacaacagctcctggccggtg
gaagtgcctgatatcaaagaaggtttcattgtggtgaagggccacagcacgtgtctgagt
gagggagccctttctccagatggaactgtgttggccacagcaagccatgacggttttgtg
aaattttggcagatctatattgagggacaggatgagccaagatgtcttcatgagtggaaa
ccccatgatggcagacctctctcttgtctgcttttttgtgacaaccataaaaaacaagac
ccagaagttcccttctggaggtttctcatcacaggagccgatcagaacagagaactgaag
atgtggtgcacggtgtcttggacctgtttgcagactgttcgcttttctcctgacatcttc
agctccatgaatattcctcccagcctgaaagtctgcctggacctttctgctgaatatctg
atactgagtgatgtgcagagaaaagtgttgtatgtgatggagttgatgcagaaccaagag
gagggcaaggcttatttcagctccatctcagagttcctccttacccacccagtgctgagc
tttggcatccaggccgtgagccgctgccggctaaggcacaccgaggtgctcccagcagaa
gaggaaaatgacaacctgagtgtggaaggtgctcagggctctggggctgttgaatcagca
gcaggtgtgctgataaaactcttctgtgttcacaccaaggccctacaggatgtgcagatt
agattccagcctcttcatagccctgacacaagtgcttccatgccttcccatggctctcat
gaagaatttgcctttccagaccatatggctgatctgagcacggaagggctgggctctgag
aaggagtcagcgcacggctcccagccagacctgcggcgtatcgccgacctgcctgtgcca
gctgacttcctctcgctctccagtgatgccaaacccaagctgatgactccagatgcattc
atgacaccaagcacttctcttcagcagatcgccgtctctccaggcagcagtgtcagttcc
ctgactgcagtcacagccatgagcagcacttctgtcacagatgcctctctgcccagagca
tcggaggacttgactgtgagccccaagatgcagctggacaccagcctgacgctgagcagc
agcagcagcagtctccagaccagtcctaggagtcactctgttcttatcccaggcctccct
gacaagctaacaccaaaggcaccagttccagtcgcaccaggaaactcctctctagcactg
gaactgcaggaagtggagcccttggtggtgccccaggcttctcccacccgcgagcgctcc
ccagacgtcatttcctctgcttccacagccatgtcccaggatatcccagagattgcttcc
gagaccctgcagcgcagcttcgcggcggctccggccgggctgcccggggaggtgctggag
cccgggcaccacgcagacagtatggcctcagctgcctcggccctgcacctgctgtctccc
aggaaccgccacaactctgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaatgctccgtcattactggagactgctttaactcaggaaaatgcatcttct
gacagtgttgtgagtcagccgtggccagcggcccctgacataacccgggaaaccaggaac
agcatggcagacagcccaagggatgaggttgaggaaaagcacaagagctcttcctaccat
cgacacagctaccaccttctgcagcatgacagccaggatgccagtgcagaacaaagtgac
cacgatgatgaagttgcaagcttggcttctacgtcaggtgggtttggtgccaaagcatct
gcgcagaggctgcccgtgaaggactggaaggtcaaggcatccccgcgggcttccccgaag
ctaaagcggaagggcaagaaggatgacggggatatgaaccagtcaccaagatcatctaat
aaccaggtgaccccagagttccaggatgagctgatgtgcatcctgaggagccaacagcgg
gagctctccgagctgcggcagaaccagatggagctgctgcagagactcacagatcacctc
gatgccatccagagctccctcatgggccacgtggagagggtgatcgactcccagcaggag
caggagcaaagaagactggaccgggtgctgatggaagggcagcagcgcaacgggcagctc
caggagcacctgtcccagcagctctcccagtccctgtccacagctgtgtgtaaccggctg
gagaggaccattcgggacgagatgaagaagacaatgccccagtgcatttccaagagcatg
gaccctactgtcagccagctcagtaatactattgctgccaagctcactgctgttgagggg
acgctgaaagagaatattaccaagctaatgaaatcaaagaaccttacagacagtgttgtg
agggccacagctgacagtctgcagggacccatccagtcagcctacagggaggccttccag
agcgtcgtgctgccagccttcgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatatccagcagctggaggctcacttgaagaacaag
aaggtacgagagcaggaggtgcgggacccgctgctgaaccagcttcggcagctcatcagc
accttccagagcagcacggagcagctggcgtccaccatcgcggccagcgtccatgccgag
gtgcagcaccagctgcacatcatcgtgggcaacatgcaggagtctattttggcccaggtg
cagagagtcattaaaggagaagtgagcctggctatgaaggagcagcaagcagctgtcacc
tcgagcatcgtccaggcgatgcgctcggcagccgggacacccatcccctctactcacatg
gatttccagtcccagcagactcacatccttcagctgctccagcagggacacctcaaccag
gctttccagcaggctctaacagcagctgatctcaacctggttctatatgtctgtgagact
gtggatactcagcaagtgtttggacagcacccatgcccgctgtcccagcccgtgctgctc
tccctcattcagcagctctcctcagatcttggcacgcgtacggaactgaagctgaactac
ttggaggacgcagtgatgcacctggaccaaagcgaccccatcactcgggaccacatgggg
tcagtcatgaaccaggtgcggcaaaagcttttccagttcctccaggtggaaccccacaac
cctctgagcaaacccgcacgtcgcctcatgatcatgctccagggcctggtcacccctggc
atgacctag
DBGET
integrated database retrieval system
