Hirundo rustica (Barn swallow): 120757895
Help
Entry
120757895 CDS
T09369
Symbol
CTCF
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
hrt
Hirundo rustica (Barn swallow)
Brite
KEGG Orthology (KO) [BR:
hrt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hrt03000
]
120757895 (CTCF)
03036 Chromosome and associated proteins [BR:
hrt03036
]
120757895 (CTCF)
Transcription factors [BR:
hrt03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
120757895 (CTCF)
Chromosome and associated proteins [BR:
hrt03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
120757895 (CTCF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-C2H2_ZN142
Zf-C2H2_ZNF451_C
zf-C2H2_7th_ZNF462
zf-met
zf-C2HE
zf-C2H2_6
Zf-C2H2_ZNF451
zf-C2H2_15
zf-WIZ
Motif
Other DBs
NCBI-GeneID:
120757895
NCBI-ProteinID:
XP_039931544
LinkDB
All DBs
Position
11:7029593..7064425
Genome browser
AA seq
750 aa
AA seq
DB search
MKRTNQSRQKCRSVKNINQEGEMEGEAVDAIVEESETFIKGKERKTYQRRREGGQEDDAC
HIPPNQADGSEVVQDVSSGVQMVMMDQLDPTLLQMKTEVMEGAVPQETEATVDDTQIITL
QVVNMEEQPINLGELQLVQVPVPVTVPVATTSVEELQGAYENEVSKGGLQEGEPMICHTL
PLPEGFQVVKVGANGEVETLEQGELQPQEDPNWQKDPDYQPPAKKTKKNKKSKLRYTEEG
KDVDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGVKKTFQCELCSYTCPRR
SNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELV
RHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHM
RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK
QHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMVMHKRTHT
GEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCS
GLDGGEGENGGETKKGKRGRKRKMRSKKEDSSDSEENAEPDLDDNEDEEETAVEIEAEPE
VEQEAPAPPPSKKRRGRPPGKAAAQPKQSQPAAIIQVEDQNTGEIENIIVEVKKEPDAET
AEEEEEAQPAVVEAPNGDLTPEMILSMMDR
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaacaaatcagtccaggcagaagtgcagaagcgtcaagaacataaatcaggaa
ggtgaaatggaaggtgaggcagtcgacgctatcgtggaggaatcagaaactttcattaag
ggaaaagagaggaaaacctatcaaagacgccgtgaaggtggacaagaggatgatgcttgt
catatacccccaaatcaagcagatggaagtgaagtggtgcaggatgtcagcagtggggtg
cagatggtgatgatggatcagctggatccaactctgcttcaaatgaagaccgaagtaatg
gaaggtgcagtgcctcaagaaactgaggctactgtggatgacacacagatcataacactt
caggttgttaatatggaagagcagcctataaaccttggtgagcttcagctggtccaagta
cctgtaccagtgactgtacctgttgccaccacatctgtggaagaactgcagggagcttat
gaaaatgaggtttccaaaggaggcctgcaggagggggagcccatgatctgtcacaccctc
cctttaccagaaggcttccaagttgtgaaagtgggtgcaaatggtgaggtggagacactg
gaacaaggtgaacttcagccacaggaagatcccaattggcaaaaagatccagactatcag
ccaccagccaaaaaaacaaagaaaaacaaaaagagtaagcttcgttacactgaggaaggc
aaagatgtggatgtctctgtatatgactttgaagaggagcagcaagagggtttgttgtcc
gaggttaatgcagaaaaggtggttggcaatatgaagccaccaaaaccaacaaaaattaaa
aagaaaggtgtaaagaagacattccagtgcgaactgtgcagttacacttgtccacgtcgt
tccaacctggaccgccacatgaaaagccacaccgatgaaagaccacacaagtgccatctc
tgtggcagggctttccggacagtcacattgctgaggaaccacctcaacactcacacaggt
actcgccctcacaagtgcccagactgcgacatggcctttgtgaccagtggagagttggtt
cggcatcgccgctacaaacacacccacgagaaaccattcaaatgttccatgtgtgactat
gccagcgtggaggttagcaaattgaaacgccacatccgttcgcacaccggggagcgcccg
ttccagtgcagcctgtgcagctatgccagcagagacacctacaaactgaagaggcacatg
aggacccactccggagagaagccatatgaatgttacatctgccatgctcgcttcactcag
agcggtaccatgaagatgcacattttgcagaagcacacagagaatgtggccaaattccac
tgtcctcactgtgataccgttatagcgagaaagagtgacctgggcgtccacttgcggaag
cagcattcctacattgagcagggcaagaagtgtcgctactgtgatgctgtgttccatgag
aggtatgccctcatccagcatcaaaagtcccacaagaacgagaagcgcttcaagtgtgac
cagtgtgattatgcctgcagacaggagcggcacatggtcatgcacaaacggacccatact
ggagaaaagccttatgcctgtagccattgtgataaaaccttccgccagaagcagctcctt
gacatgcacttcaagagataccatgatcccaacttcgtccctgctgcctttgtctgctcc
aagtgtggcaaaacattcactcgcaggaacacaatggccagacatgctgataactgctct
ggcctagatggtggggaaggagagaatggaggagagacaaagaaaggcaaacgtggccga
aagagaaagatgcgttctaagaaagaagattcttctgatagcgaggaaaatgctgaacca
gatttggatgataatgaagatgaggaggagacagcagtagaaattgaggctgaaccagaa
gttgagcaagaggctcctgcaccacctcccagtaagaaaagaagaggaagaccaccaggc
aaagcggccgcgcaaccaaaacaatcccagcctgcagcaatcattcaggttgaagaccag
aacactggtgaaattgaaaatattatagttgaagtgaagaaagagcctgatgcagaaaca
gcagaggaagaggaggaagctcagcctgctgtagtggaagctcccaatggagacctcacc
cctgagatgattctcagcatgatggaccggtga
DBGET
integrated database retrieval system
